View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2356_low_5 (Length: 480)

Name: NF2356_low_5
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2356_low_5
NF2356_low_5
[»] chr7 (8 HSPs)
chr7 (266-470)||(48091407-48091611)
chr7 (1-248)||(48091602-48091856)
chr7 (1-74)||(48074693-48074766)
chr7 (290-442)||(48074379-48074531)
chr7 (300-448)||(1807235-1807383)
chr7 (286-448)||(48100337-48100499)
chr7 (1-60)||(48084107-48084166)
chr7 (299-364)||(48083711-48083776)
[»] chr6 (2 HSPs)
chr6 (349-445)||(7388254-7388350)
chr6 (1-105)||(7387528-7387632)
[»] chr1 (5 HSPs)
chr1 (289-451)||(35355230-35355392)
chr1 (1-46)||(35377902-35377947)
chr1 (348-451)||(29769753-29769856)
chr1 (1-42)||(35354992-35355033)
chr1 (1-46)||(35372253-35372298)
[»] chr4 (1 HSPs)
chr4 (299-442)||(6343053-6343196)
[»] chr2 (1 HSPs)
chr2 (398-436)||(12945917-12945955)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 266 - 470
Target Start/End: Complemental strand, 48091611 - 48091407
Alignment:
Q  266 aaatagaaatgaatgattatcttaactgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataa 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48091611 aaatagaaatgaatgattatcttaactgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataa 48091512  T
Q  366 ggaggagcatcagctcgagcagtagttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaaagcacgttgtgccactgtgc 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48091511 ggaggagcatcagctcgagcagtagttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaaagcacgttgtgccactgtgc 48091412  T
Q  466 ctttg 470  Q
    |||||    
T  48091411 ctttg 48091407  T

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Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 48091856 - 48091602
Alignment:
Q  1 tcattgagaattccaatgccagcggaagcaaaattggcaccaactagtagcgcctctccattgagttcaggacttaaataaggcaacgttggttctgccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48091856 tcattgagaattccaatgccagcggaagcaaaattggcaccaactagtagcgcctctccattgagttcaggacttaaataaggcaacgttggttctgccc 48091757  T
Q  101 caagtgcttgacctgcaaaatcattgcat--------nnnnnnnnctatataagtttaatgttaatcacattattatgggggatataaattttgcatggt 192  Q
    |||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48091756 caagtgcttgacctgcaaaatcattgcataaaaaaaaaaaaaaaactatataagtttaatgttaatcacattattatgggggatataaattttgcatggt 48091657  T
Q  193 tgctgagtgagggagaattaggtcgaagattcaatcttcactctcaacatagaaat 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48091656 tgctgagtgagggagaattaggtcgaagattcaatcttcactctcaa-atagaaat 48091602  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 48074766 - 48074693
Alignment:
Q  1 tcattgagaattccaatgccagcggaagcaaaattggcaccaactagtagcgcctctccattgagttcaggact 74  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48074766 tcattgagaattccaattccagcagaagcgaaattggcaccaactagtagcgcctctccattgagttcaggact 48074693  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 290 - 442
Target Start/End: Complemental strand, 48074531 - 48074379
Alignment:
Q  290 actgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataaggaggagcatcagctcgagcagta 389  Q
    |||||| | |||||| ||||||  |||||| ||||| ||||| ||||  |   |||||||||||||||||||||||||   || |||||| ||||||||     
T  48074531 actgataaggtcaggcatgttgaggccattggagaagcgtccagtggcacggtgagttggataatcaatgccataagggtaagaatcagcacgagcagtg 48074432  T
Q  390 gttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaa 442  Q
    ||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||    
T  48074431 gttgctaagtagttattgttgccattgtcaacaagtgaatcaccaaaaacaaa 48074379  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 448
Target Start/End: Complemental strand, 1807383 - 1807235
Alignment:
Q  300 tcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataaggaggagcatcagctcgagcagtagttgctaagt 399  Q
    |||||||| ||| ||||||| || ||||| || || ||| ||||||||||||||||||| ||||||||||||| |||||| |||||||| ||    || |    
T  1807383 tcaggaatattgaagccatttgaaaaacgaccagttggtttacgagttggataatcaattccataaggaggagaatcagcacgagcagttgtaagcaaat 1807284  T
Q  400 aattattgttaccattatcaacaagagaatcaccaaacacaaagaaagc 448  Q
    |||| || || |||||||||||||| ||||| ||||| ||||| |||||    
T  1807283 aattgttatttccattatcaacaagtgaatctccaaatacaaaaaaagc 1807235  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 286 - 448
Target Start/End: Complemental strand, 48100499 - 48100337
Alignment:
Q  286 cttaactgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataaggaggagcatcagctcgagc 385  Q
    |||||||||| |  |||||||| |||   ||||| ||||| || ||||| || ||||  || ||||||||||| ||||||||||||| |||||| | |||    
T  48100499 cttaactgataagatcaggaatattgagaccattggagaatcgaccggttggcctaccggtcggataatcaattccataaggaggagaatcagccctagc 48100400  T
Q  386 agtagttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaaagc 448  Q
    ||||||| | || ||||| ||||| ||| | |||||||| ||||||||||| |||||||||||    
T  48100399 agtagttaccaaataattgttgttgccactgtcaacaagtgaatcaccaaatacaaagaaagc 48100337  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 48084166 - 48084107
Alignment:
Q  1 tcattgagaattccaatgccagcggaagcaaaattggcaccaactagtagcgcctctcca 60  Q
    ||||||||||||||||| |||||||| ||||| |||||||||| ||| |||  |||||||    
T  48084166 tcattgagaattccaatcccagcggatgcaaagttggcaccaattagaagcttctctcca 48084107  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 48083776 - 48083711
Alignment:
Q  299 gtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccata 364  Q
    |||||| || |||||||||||||||||||| || || || ||  || |||||||||||||||||||    
T  48083776 gtcagggatattgtagccattagagaaacgccctgtaggcctgtgacttggataatcaatgccata 48083711  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 445
Target Start/End: Original strand, 7388254 - 7388350
Alignment:
Q  349 gataatcaatgccataaggaggagcatcagctcgagcagtagttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaa 445  Q
    |||||||||| |||||||| || |||||||| || |||||||| || |||||||| || || |||||||||||||| ||||| |||||||| |||||    
T  7388254 gataatcaataccataagggggtgcatcagcacgtgcagtagtagccaagtaattgttatttccattatcaacaagtgaatctccaaacactaagaa 7388350  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 7387528 - 7387632
Alignment:
Q  1 tcattgagaattccaatgccagcggaagcaaaattggcaccaactagtagcgcctctccattgagttcaggacttaaataaggcaacgttggttctgccc 100  Q
    |||||||| |||||||| ||||| ||||||||||| || |||||||| |||   |||||  | | |||||||||||| || ||||| ||||| || || |    
T  7387528 tcattgagtattccaattccagctgaagcaaaattagctccaactagaagcttttctcctcttaattcaggacttaagtatggcaatgttggctcagcac 7387627  T
Q  101 caagt 105  Q
    |||||    
T  7387628 caagt 7387632  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 451
Target Start/End: Original strand, 35355230 - 35355392
Alignment:
Q  289 aactgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataaggaggagcatcagctcgagcagt 388  Q
    ||||||| || ||||||| |||  ||||||| ||||||||||| ||||||  |||||||||| |||||||||||||||| |||  ||  ||||| || |     
T  35355230 aactgattaaatcaggaacgtttaagccattggagaaacgtccagtgggttgacgagttggaaaatcaatgccataaggtggataattggctcgcgccga 35355329  T
Q  389 agttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaaagcacg 451  Q
     || || ||  |||| || || |||||||||||||| || || |||||||| |||||||||||    
T  35355330 ggtagccaaaaaattgttattgccattatcaacaagtgagtctccaaacacgaagaaagcacg 35355392  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35377902 - 35377947
Alignment:
Q  1 tcattgagaattccaatgccagcggaagcaaaattggcaccaacta 46  Q
    ||||||||||||||||| || ||||| |||||||||||||||||||    
T  35377902 tcattgagaattccaatacccgcggatgcaaaattggcaccaacta 35377947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 451
Target Start/End: Original strand, 29769753 - 29769856
Alignment:
Q  348 ggataatcaatgccataaggaggagcatcagctcgagcagtagttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaaag 447  Q
    |||||||| ||||||||||||||||  || || || || || |||   || ||||||||||| ||| | |||||||| || |||||||| ||||||||||    
T  29769753 ggataatcgatgccataaggaggagagtcggcacgtgccgtggttagcaaataattattgttgccactgtcaacaagtgagtcaccaaaaacaaagaaag 29769852  T
Q  448 cacg 451  Q
    ||||    
T  29769853 cacg 29769856  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35354992 - 35355033
Alignment:
Q  1 tcattgagaattccaatgccagcggaagcaaaattggcacca 42  Q
    |||||||||||||||||||| || |||||||| |||||||||    
T  35354992 tcattgagaattccaatgccggcagaagcaaagttggcacca 35355033  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35372253 - 35372298
Alignment:
Q  1 tcattgagaattccaatgccagcggaagcaaaattggcaccaacta 46  Q
    ||||| |||||||||| ||| || ||||||||||||||||||||||    
T  35372253 tcattaagaattccaacgcccgcagaagcaaaattggcaccaacta 35372298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 442
Target Start/End: Original strand, 6343053 - 6343196
Alignment:
Q  299 gtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataaggaggagcatcagctcgagcagtagttgctaag 398  Q
    |||||| ||||||  |||||| |||||||| || |  | |||| ||||| || ||||||| |||||||||   | |||||| ||||||||||| |||| |    
T  6343053 gtcaggcatgttgaggccattggagaaacgaccagaagctctatgagtttgagaatcaattccataaggatatgaatcagcacgagcagtagtggctagg 6343152  T
Q  399 taattattgttaccattatcaacaagagaatcaccaaacacaaa 442  Q
     | ||||| || |||||||| ||||||||||||||||| |||||    
T  6343153 aagttattatttccattatccacaagagaatcaccaaaaacaaa 6343196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 436
Target Start/End: Original strand, 12945917 - 12945955
Alignment:
Q  398 gtaattattgttaccattatcaacaagagaatcaccaaa 436  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  12945917 gtaattattgttaccattatcaagaagagaatctccaaa 12945955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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