View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2356_low_7 (Length: 431)

Name: NF2356_low_7
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2356_low_7
NF2356_low_7
[»] chr8 (14 HSPs)
chr8 (1-413)||(5604383-5604795)
chr8 (1-413)||(5630575-5630987)
chr8 (1-300)||(5648181-5648480)
chr8 (65-310)||(5554155-5554400)
chr8 (11-272)||(13167921-13168182)
chr8 (63-310)||(6307444-6307691)
chr8 (91-317)||(9862101-9862327)
chr8 (115-286)||(32636048-32636216)
chr8 (176-309)||(12185053-12185186)
chr8 (176-309)||(12429481-12429614)
chr8 (352-413)||(6307736-6307797)
chr8 (353-413)||(32635915-32635975)
chr8 (1-47)||(5554403-5554449)
chr8 (373-410)||(5554052-5554089)


Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 5604383 - 5604795
Alignment:
Q  1 caaaacttgttggaggaactatttcttcttgctcattggattgaaaatccgatgaagacaaggtttcttcttcatcattggattcagaaattgttgaaga 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5604383 caaaacttgttgcaggaactatttcttcttgctcattggattgaaaatccgatgaagacaaggtttcttcttcatcattggattcagaaattgttgaaga 5604482  T
Q  101 aactgtttcttcttgatatatccagcgaaacccacactcttctatctctacttcatcatatagagtttcatcaataaagaatgtaaatgtaagctttgga 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5604483 aactgtttcttcttgatatatccagcgaaacccacactcttttatctctacttcatcatatagagtttcatcaataaagaatgtaaatgtaagctttgga 5604582  T
Q  201 ttgcaacaggtgctgttcacatcactaatggattttgtttgttcaactgcatccattatctgcttgcaactttgaggatcataccatacaagcaaatgat 300  Q
     || |||  ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||    
T  5604583 gtgtaactcgtgctgttcccatcactaatggcttttgtttgttcaactgcatccattatctgcttgcaacttctaggatcataccatacgagcaaatgat 5604682  T
Q  301 ctgatatcatatcgatttcagtatctgttttgtcaaattttaagaagttacctcttgtggaacttagtatatagattctttcgcctgaactattgtccaa 400  Q
    |||| ||||| ||||||  |||||| ||   |||| |||||  || |||    ||| || |||||  |||| | |||||||| ||||||||||| |||||    
T  5604683 ctgacatcatgtcgattgaagtatcagtccagtcacattttttgatgttgagccttttgaaacttgttatacatattctttcacctgaactattttccaa 5604782  T
Q  401 gtggcactcacat 413  Q
    || ||||||||||    
T  5604783 gttgcactcacat 5604795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 5630987 - 5630575
Alignment:
Q  1 caaaacttgttggaggaactatttcttcttgctcattggattgaaaatccgatgaagacaaggtttcttcttcatcattggattcagaaattgttgaaga 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5630987 caaaacttgttgcaggaactatttcttcttgctcattggattgaaaatccgatgaagacaaggtttcttcttcatcattggattcagaaattgttgaaga 5630888  T
Q  101 aactgtttcttcttgatatatccagcgaaacccacactcttctatctctacttcatcatatagagtttcatcaataaagaatgtaaatgtaagctttgga 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5630887 aactgtttcttcttgatatatccagcgaaacccacactcttttatctctacttcatcatatagagtttcatcaataaagaatgtaaatgtaagctttgga 5630788  T
Q  201 ttgcaacaggtgctgttcacatcactaatggattttgtttgttcaactgcatccattatctgcttgcaactttgaggatcataccatacaagcaaatgat 300  Q
     || |||  ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||    
T  5630787 gtgtaactcgtgctgttcccatcactaatggcttttgtttgttcaactgcatccattatctgcttgcaacttctaggatcataccatacgagcaaatgat 5630688  T
Q  301 ctgatatcatatcgatttcagtatctgttttgtcaaattttaagaagttacctcttgtggaacttagtatatagattctttcgcctgaactattgtccaa 400  Q
    |||| ||||| ||||||  |||||| ||   |||| |||||  || |||    ||| || |||||  |||| | |||||||| ||||||||||| |||||    
T  5630687 ctgacatcatgtcgattgaagtatcagtccagtcacattttttgatgttgagccttttgaaacttgttatacatattctttcacctgaactattttccaa 5630588  T
Q  401 gtggcactcacat 413  Q
    || ||||||||||    
T  5630587 gttgcactcacat 5630575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 5648480 - 5648181
Alignment:
Q  1 caaaacttgttggaggaactatttcttcttgctcattggattgaaaatccgatgaagacaaggtttcttcttcatcattggattcagaaattgttgaaga 100  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| ||| |||||||||||||||||||||    
T  5648480 caaaatttgttggagaaactatttcttcttgctcattggattgaaaatctgatgaagacatggtctcttcttcaacatgggattcagaaattgttgaaga 5648381  T
Q  101 aactgtttcttcttgatatatccagcgaaacccacactcttctatctctacttcatcatatagagtttcatcaataaagaatgtaaatgtaagctttgga 200  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||  ||||||||||||||||||||||||| |    
T  5648380 aactgtttcttgttgatatatccagcgaaacccacactcttttatctctacttcgtcatatagagtttcattcataaagaatgtaaatgtaagctttgaa 5648281  T
Q  201 ttgcaacaggtgctgttcacatcactaatggattttgtttgttcaactgcatccattatctgcttgcaactttgaggatcataccatacaagcaaatgat 300  Q
    ||| ||  |||||| ||| | ||| |||||| |||||||||||  |||| ||||||||||||||||||| |||| ||||| ||||||| || ||||||||    
T  5648280 ttgtaaatggtgctattcgcgtcagtaatggcttttgtttgttggactgtatccattatctgcttgcaaatttgtggatcgtaccataaaaccaaatgat 5648181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 65 - 310
Target Start/End: Complemental strand, 5554400 - 5554155
Alignment:
Q  65 ttcttcttcatcattggattcagaaattgttgaagaaactgtttcttcttgatatatccagcgaaacccacactcttctatctctacttcatcatataga 164  Q
    ||||||||||||||  |||||||||||| | |||||||||||||| |||||||| |||||| |||| |||||||||| ||| ||||||||||||||||||    
T  5554400 ttcttcttcatcatgtgattcagaaattatcgaagaaactgtttcctcttgataaatccagtgaaatccacactcttttatttctacttcatcatataga 5554301  T
Q  165 gtttcatcaataaagaatgtaaatgtaagctttggattgcaacaggtgctgttcacatcactaatggattttgtttgttcaactgcatccattatctgct 264  Q
    ||||||| ||||||||||||||| ||||||||||||| | ||| |||| ||||||| ||| |||||  |||| |||||||||||||||||||||||||||    
T  5554300 gtttcattaataaagaatgtaaacgtaagctttggatcgtaactggtgttgttcacgtcagtaatgacttttatttgttcaactgcatccattatctgct 5554201  T
Q  265 tgcaactttgaggatcataccatacaagcaaatgatctgatatcat 310  Q
    |||||||||  ||||||||||||| || |||||||||||| |||||    
T  5554200 tgcaactttctggatcataccataaaaccaaatgatctgaaatcat 5554155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 11 - 272
Target Start/End: Complemental strand, 13168182 - 13167921
Alignment:
Q  11 tggaggaactatttcttcttgctcattggattgaaaatccgatgaagacaaggtttcttcttcatcattggattcagaaattgttgaagaaactgtttct 110  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||     ||||||||||||||| |||||||||||||||| ||| ||||||||||    
T  13168182 tggaggaactattacttcttgatcattggattgaaaatccgatgaagatgcaatttcttcttcatcatgggattcagaaattgttaaaggaactgtttct 13168083  T
Q  111 tcttgatatatccagcgaaacccacactcttctatctctacttcatcatatagagtttcatcaataaagaatgtaaatgtaagctttggattgcaacagg 210  Q
    || | ||| |||||| ||||||||||||||| |||| |||||||||| |||| | |||||| |||||||||| |||||||||||||||||||| |||  |    
T  13168082 tccttatacatccagtgaaacccacactcttttatcactacttcatcgtatatattttcatgaataaagaatctaaatgtaagctttggattgtaactag 13167983  T
Q  211 tgctgttcacatcactaatggattttgtttgttcaactgcatccattatctgcttgcaactt 272  Q
    || ||||||||||| ||  || |||| ||| ||||| ||| |||||||| ||||||||||||    
T  13167982 tgttgttcacatcattatcggcttttatttcttcaaatgcttccattatttgcttgcaactt 13167921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 63 - 310
Target Start/End: Original strand, 6307444 - 6307691
Alignment:
Q  63 gtttcttcttcatcattggattcagaaattgttgaagaaactgtttcttcttgatatatccagcgaaacccacactcttctatctctacttcatcatata 162  Q
    |||||||||| |||||  |||||| |||||||||||| ||  |||||||| | |||||||||| |||| |||||||||| ||||  ||||||||||||||    
T  6307444 gtttcttcttgatcatgagattcaaaaattgttgaaggaatagtttcttccttatatatccagtgaaatccacactcttttatcgatacttcatcatata 6307543  T
Q  163 gagtttcatcaataaagaatgtaaatgtaagctttggattgcaacaggtgctgttcacatcactaatggattttgtttgttcaactgcatccattatctg 262  Q
    ||  ||| |||||||||||| ||||||||||||||||||||||||  ||||||||||||||| ||||||||||| ||| |||||||||  ||||||||||    
T  6307544 gatcttcttcaataaagaatctaaatgtaagctttggattgcaactagtgctgttcacatcattaatggattttatttcttcaactgctgccattatctg 6307643  T
Q  263 cttgcaactttgaggatcataccatacaagcaaatgatctgatatcat 310  Q
    ||||||||||    ||||||||||   || ||||||||| ||||||||    
T  6307644 cttgcaacttgcttgatcataccaagaaaccaaatgatccgatatcat 6307691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 91 - 317
Target Start/End: Original strand, 9862101 - 9862327
Alignment:
Q  91 ttgttgaagaaactgtttcttcttgatatatccagcgaaacccacactcttctatctctacttcatcatatagagtttcatcaataaagaatgtaaatgt 190  Q
    |||||| || |||| |||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |||||||    
T  9862101 ttgttggagcaactatttcttcttgatatatccagcgaaccccacactcttttatcgctacttcatcatatatagtttcatcaataaagaatctaaatgt 9862200  T
Q  191 aagctttggattgcaacaggtgctgttcacatcactaatggattttgtttgttcaactgcatccattatctgcttgcaactttgaggatcataccataca 290  Q
    ||||||||||||| |||  || |||||||||||| |||    |||||||| || |||||  || ||||||| | ||||    || |||||||||||||      
T  9862201 aagctttggattgtaactagttctgttcacatcattaactacttttgtttctttaactgtttctattatcttcctgcacaaatgtggatcataccatatg 9862300  T
Q  291 agcaaatgatctgatatcatatcgatt 317  Q
    |||| ||||||||||| ||| ||||||    
T  9862301 agcagatgatctgataccatctcgatt 9862327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 115 - 286
Target Start/End: Complemental strand, 32636216 - 32636048
Alignment:
Q  115 gatatatccagcgaaacccacactcttctatctctacttcatcatatagagtttcatcaataaagaatgtaaatgtaagctttggattgcaacaggtgct 214  Q
    ||||||||||| |||| ||||||||| |||||  | |||||| |  | | ||||| |||||||||||| |||| ||||||||||||||| ||    || |    
T  32636216 gatatatccagtgaaaaccacactctactatcatttcttcattacgttgggtttcttcaataaagaatctaaaagtaagctttggattgtaat---tgat 32636120  T
Q  215 gttcacatcactaatggattttgtttgttcaactgcatccattatctgcttgcaactttgaggatcatacca 286  Q
    | |||||||| ||||| ||||||||| ||||||||| ||||||||||| ||||||||| | |||||||||||    
T  32636119 gatcacatcattaatgaattttgtttcttcaactgcttccattatctgtttgcaacttcgtggatcatacca 32636048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 309
Target Start/End: Complemental strand, 12185186 - 12185053
Alignment:
Q  176 aaagaatgtaaatgtaagctttggattgcaacaggtgctgttcacatcactaatggattttgtttgttcaactgcatccattatctgcttgcaactttga 275  Q
    ||||||||||||||| |||||||||||| ||| |||||||||||| ||||| |||| ||| |||||||||| || || ||||||||| || ||  || |     
T  12185186 aaagaatgtaaatgtgagctttggattgtaactggtgctgttcacgtcacttatggctttcgtttgttcaattgtattcattatctgtttccattttcgt 12185087  T
Q  276 ggatcataccatacaagcaaatgatctgatatca 309  Q
    ||||||||||| | || ||||| |||||| ||||    
T  12185086 ggatcataccaaaaaaccaaattatctgacatca 12185053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 309
Target Start/End: Complemental strand, 12429614 - 12429481
Alignment:
Q  176 aaagaatgtaaatgtaagctttggattgcaacaggtgctgttcacatcactaatggattttgtttgttcaactgcatccattatctgcttgcaactttga 275  Q
    ||||||||||||||| |||||||||||| ||| |||||||||||| ||||| |||| ||| |||||||||| || || ||||||||| || ||  || |     
T  12429614 aaagaatgtaaatgtgagctttggattgtaactggtgctgttcacgtcacttatggctttcgtttgttcaattgtattcattatctgtttccattttcgt 12429515  T
Q  276 ggatcataccatacaagcaaatgatctgatatca 309  Q
    ||||||||||| | || ||||| |||||| ||||    
T  12429514 ggatcataccaaaaaaccaaattatctgacatca 12429481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 6307736 - 6307797
Alignment:
Q  352 ctcttgtggaacttagtatatagattctttcgcctgaactattgtccaagtggcactcacat 413  Q
    |||||||| |||||  ||||||||||||||| ||||||||||||||||| | ||||||||||    
T  6307736 ctcttgtgaaacttgttatatagattctttcacctgaactattgtccaaatagcactcacat 6307797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 413
Target Start/End: Complemental strand, 32635975 - 32635915
Alignment:
Q  353 tcttgtggaacttagtatatagattctttcgcctgaactattgtccaagtggcactcacat 413  Q
    ||||||| |||||  ||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  32635975 tcttgtgaaacttgttatatagatcctttcacctgaactattgtccaagtagcactcacat 32635915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5554449 - 5554403
Alignment:
Q  1 caaaacttgttggaggaactatttcttcttgctcattggattgaaaa 47  Q
    ||||| ||||||||| |||||||||||| || |||||||||||||||    
T  5554449 caaaatttgttggagaaactatttcttcatgatcattggattgaaaa 5554403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 410
Target Start/End: Complemental strand, 5554089 - 5554052
Alignment:
Q  373 agattctttcgcctgaactattgtccaagtggcactca 410  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  5554089 agattctttcacctgaactattgtccaagtagcactca 5554052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University