View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2356_low_8 (Length: 423)
Name: NF2356_low_8
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2356_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Complemental strand, 39684067 - 39683679
Alignment:
| Q |
17 |
taatcttagtatattgaacatagggaaaaccaaagaatnnnnnnnnnnnnnttactcaaccaaggcaaagcatctggtgaggtgccaactctttttcttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39684067 |
taatcttagtatattgaacatagggaaaaccaaagaataaaaatgaaaaaattactcaaccaaggcaaagcatctggtgaggtgccaactctttttcttt |
39683968 |
T |
|
| Q |
117 |
ttgtcgaaagattaggagatgttagcaagaatgtctttgaagtcgtcaacatcacatatgattctaagcacaccttgttggtatccatactctttagcag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39683967 |
ttgtcgaaagattaggagatgttagcaagaatgtctttaaagtcgtcaacatcacatatgattctaagcacaccttgttggtatccatactctttagcag |
39683868 |
T |
|
| Q |
217 |
attgttctaagaattcaacaatttttggatgatgaatcactttgatgctcacccaaatcctctccatatcttctcctcctttgcctactagcaccggaac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39683867 |
attgttctaagaattcaacaatttttggatgatgaatcactttgatgctcacccaaatcctctccatatcttctcctcctttgcttactagcaccggaac |
39683768 |
T |
|
| Q |
317 |
atgccctttgttactttgtttcatatcttctctctaattcaaatattgattcttctctttggcttttgctttatatagagcatatgcat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39683767 |
atgccctttgttactttgtttcatatcttctctctaattcaaatattgattcttctctttggcttttgctttatatagagcatatgcat |
39683679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 135 - 357
Target Start/End: Complemental strand, 39689414 - 39689180
Alignment:
| Q |
135 |
atgttagcaagaatgtctttgaagtcgtcaacatcacatatgattctaagcacaccttgttggtatccatactctttagcagattgttctaagaattcaa |
234 |
Q |
| |
|
||||||||||||||| |||||||| |||| ||||| | |||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
39689414 |
atgttagcaagaatgactttgaagatctcaatatcacgtctgattctaagcacaccctgttggtatccatattctttagcagattgttccaacaattcaa |
39689315 |
T |
|
| Q |
235 |
caatttttggatgatgaatcactttgatgctcacccaaatcctctccatatcttctcctcc------------tttgcctactagcaccggaacatgccc |
322 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||| ||||||||||| |
|
|
| T |
39689314 |
caattttgggatggtgaatcactttgatgctcacccaaatcctctccatatcttcttcttcttcttcttcctttttgcctactagcactggaacatgccc |
39689215 |
T |
|
| Q |
323 |
tttgttactttgtttcatatcttctctctaattca |
357 |
Q |
| |
|
|||||||||||||||||| ||| || ||| ||||| |
|
|
| T |
39689214 |
tttgttactttgtttcatctctcctatctcattca |
39689180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University