View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2357_high_11 (Length: 373)
Name: NF2357_high_11
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 44026651 - 44026304
Alignment:
| Q |
18 |
aaataatcgtagaagaagaaaaagttgggaaaagggtgttttctgtgagacttggaaagttcagaaataatggattggaggatggtagtagtcctagttt |
117 |
Q |
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| T |
44026651 |
aaataatcgtagaagaagaaaaagttgggaaaagggtgttttctgtgagacttggaaagttcagaaataatggattggaggatggtagtagtcctagttt |
44026552 |
T |
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| Q |
118 |
ggatgagagaagatgttattcaatgggttcatatcaatatcatgttcttggtgattcaaatttgcaagtggttttgtcacaatcttgttgtgatgatgat |
217 |
Q |
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| T |
44026551 |
ggatgagagaagatgttattcaatgggttcatatcaatatcatgttcttggtgattcaaatttgcaagtggttttgtcacaatcttgttgtgatgatgat |
44026452 |
T |
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| Q |
218 |
gacttaagaagtgaagaaagtgggaatgtggaggggaagaggatagggaacagaaccaaaggtgaaagtttttctgtttctaagatatggctttggtcta |
317 |
Q |
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| T |
44026451 |
gacttaagaagtgaagaaagtgggaatgtggaggggaagaggatagggaacagaaccaaaggtgaaagtttttctgtttctaagatatggctttggtcta |
44026352 |
T |
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| Q |
318 |
agaagagaaaatttactagctctaatgttgattttccttgatattctt |
365 |
Q |
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| T |
44026351 |
agaagagaaaatttactagctctaatgttgattttccttgattttctt |
44026304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 15103206 - 15103160
Alignment:
| Q |
275 |
aaaggtgaaagtttttctgtttctaagatatggctttggtctaagaa |
321 |
Q |
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| T |
15103206 |
aaaggtgaaagtttttctgtttcaaagatttggcaatggtctaagaa |
15103160 |
T |
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