View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2357_high_12 (Length: 366)
Name: NF2357_high_12
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 19588266 - 19587920
Alignment:
| Q |
1 |
aggtcacacataagttgaaatatcactattattaacataagtactcttaagtagcaatgtttaaatttggatgtaaattggacttctctgcttggcttgc |
100 |
Q |
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| T |
19588266 |
aggtcacacataagttgaaatatcactattattaacataagtactcttaagtagcaatgtttaaatttggatgcaaattggacttctctgcttggcttgc |
19588167 |
T |
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| Q |
101 |
tgcacgtaaattgttcttgaaactgtccaaagaattcttgaagtcttcaagagatgctaaatccatatcatcaatagaattattccaccaatcatgaaca |
200 |
Q |
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| T |
19588166 |
tgcacgtaaattattcttgaaactgtccaaagaatttttgaagtcttcaagagatgctaaatccatatcatcaatagaattattccaccaatcatggaca |
19588067 |
T |
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| Q |
201 |
ttaaaatcactcttctgtgactcagtgactttgagagatttcaaattatcctcctcttcttcaagtttttcttgaagtgcttcatattgaagccttaggg |
300 |
Q |
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| T |
19588066 |
ttaaaatcactcttttgtgactcagtgactttgagagatttcaaattatcctcctcttcttcaagtttttcttgaagtgcttcatattgaagccttaggg |
19587967 |
T |
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| Q |
301 |
tttcagcaatgtcatcgtcttctttcttctttttcccatcctcgacc |
347 |
Q |
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| T |
19587966 |
ttttagcgatgtcgtcgtcttctttcttctttttcccatcctcgacc |
19587920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 12895676 - 12895548
Alignment:
| Q |
67 |
ttggatgtaaattggacttctctgcttggcttgctgcacgtaaattgttcttgaaactgtccaaagaattcttgaagtcttcaagagatgctaaatccat |
166 |
Q |
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| T |
12895676 |
ttggatgtaaattgaacttcttggcttggcttgctactgataaattaatcttcaatttatccaaagaagtggtaatatcttcaagagatgttaaatccat |
12895577 |
T |
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| Q |
167 |
atcatcaatagaattattccaccaatcat |
195 |
Q |
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| T |
12895576 |
atcatcaatagatttattccaccaatcat |
12895548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 12895461 - 12895396
Alignment:
| Q |
279 |
gcttcatattgaagccttagggtttcagcaatgtcatcgtcttctttcttctttttcccatcctcg |
344 |
Q |
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| T |
12895461 |
gcttcgtatcgaagccttagggtttcaacaatgtcatcatcttgttgattctttttctcattctcg |
12895396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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