View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2357_high_18 (Length: 302)
Name: NF2357_high_18
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 23196129 - 23196381
Alignment:
| Q |
2 |
aattgatcggaaccacactatcgctcttatgttcacttttcatctcttccgacccaccaatgttgcccgaactcccattcgaactagtggcagagattct |
101 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| | |||||||| ||||||||||||||||||||||| |
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| T |
23196129 |
aattgatcggaaccacactatcactcttatgttcacttttcatgtcttccgacccaccgttgttgtctgaactcccgttcgaactagtggcagagattct |
23196228 |
T |
|
| Q |
102 |
atgcaggctccccgtcaggttcctcctacaactacgatgcctcagtaagtccttgaaaacccttatttctgatccaaagttcgctaagaaacaccttcgc |
201 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23196229 |
atgcaggctccctgtcatgttcctcctacaactacgatgcctcagtaagttcttcaatacccttatttctgatccaaagttcgctaagaaacaccttcgc |
23196328 |
T |
|
| Q |
202 |
ttatcaaccacgcgccacttgatcttatcctacgccgatattcatgataattc |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23196329 |
ttatcaaccacgcgccacttgatcttatcctacgccgatattcatgatcattc |
23196381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 2 - 212
Target Start/End: Complemental strand, 23235806 - 23235596
Alignment:
| Q |
2 |
aattgatcggaaccacactatcgctcttatgttcacttttcatctcttccgacccaccaatgttgcccgaactcccattcgaactagtggcagagattct |
101 |
Q |
| |
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|||||||||||||| | ||| |||||| ||||||| |||| |||||| |||||| | | |||| || ||||| ||||| | |||||||||||||| |
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| T |
23235806 |
aattgatcggaaccctaagatcactcttacgttcactcttcaactcttctgacccatcgcggctgccggatctcccgctcgaattggtggcagagattct |
23235707 |
T |
|
| Q |
102 |
atgcaggctccccgtcaggttcctcctacaactacgatgcctcagtaagtccttgaaaacccttatttctgatccaaagttcgctaagaaacaccttcgc |
201 |
Q |
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|||||| || || |||| | ||||||||||||| |||||||| ||||||||||| || | ||| ||||||||||| || ||||||||||||||||||||| |
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| T |
23235706 |
atgcagacttcctgtcaagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttctgatcccaatttcgctaagaaacaccttcgc |
23235607 |
T |
|
| Q |
202 |
ttatcaaccac |
212 |
Q |
| |
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||||||||||| |
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| T |
23235606 |
ttatcaaccac |
23235596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 23231828 - 23231699
Alignment:
| Q |
88 |
gtggcagagattctatgcaggctccccgtcaggttcctcctacaactacgatgcctcagtaagtccttgaaaacccttatttctgatccaaagttcgcta |
187 |
Q |
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|||||||||||||||||||| || || |||| | ||||||||||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| | |
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| T |
23231828 |
gtggcagagattctatgcagacttcctgtcaagctcctcctacaacttcgatgtctcagtaagtccttcaataccctaatctctgatcccaatttcgcaa |
23231729 |
T |
|
| Q |
188 |
agaaacaccttcgcttatcaaccacgcgcc |
217 |
Q |
| |
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||||||||||||||||||||| ||| |||| |
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| T |
23231728 |
agaaacaccttcgcttatcaatcacccgcc |
23231699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 23226560 - 23226409
Alignment:
| Q |
25 |
ctcttatgttcacttttcatctcttccgacccaccaatgttgcccgaactcccattcgaactagtggcagagattctatgcaggctccccgtcaggttcc |
124 |
Q |
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|||||||||||||| ||||||||||||||||| ||| | ||||||| |||||| ||||| | | ||||||||||||| ||||||||||||| | ||| |
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| T |
23226560 |
ctcttatgttcactcttcatctcttccgacccgccaccgctgcccgatctcccactcgaattgatctcagagattctatgtaggctccccgtcaagatcc |
23226461 |
T |
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| Q |
125 |
tcctacaactacgatgcctcagtaagtccttgaaaacccttatttctgatcc |
176 |
Q |
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|| ||||||| ||||| |||||| |||||||||| | ||| ||||||||||| |
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| T |
23226460 |
tcttacaacttcgatgtctcagttagtccttgaatatcctaatttctgatcc |
23226409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 23240269 - 23240193
Alignment:
| Q |
136 |
cgatgcctcagtaagtccttgaaaacccttatttctgatccaaagttcgctaagaaacaccttcgcttatcaaccac |
212 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||||||||| | |||| ||||||||||||||||||||||||||| |
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| T |
23240269 |
cgatgcctcagtaagtccttcaataccctaatttctgatccttatttcgttaagaaacaccttcgcttatcaaccac |
23240193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 37754158 - 37754050
Alignment:
| Q |
91 |
gcagagattctatgcaggctccccgtcaggttcctcctacaactacgatgcctcagtaagtccttgaaaacccttatttctgatccaaagttcgctaaga |
190 |
Q |
| |
|
||||| ||||||||||| ||||| |||| ||| ||| ||||||| || |||||| |||||||||| || | ||||| || |||||||| ||||| |||| |
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| T |
37754158 |
gcagaaattctatgcagactccctgtcaagttactcttacaactccggtgcctctgtaagtccttcaactctcttatctccgatccaaaattcgcaaaga |
37754059 |
T |
|
| Q |
191 |
aacaccttc |
199 |
Q |
| |
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| ||||||| |
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|
| T |
37754058 |
agcaccttc |
37754050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 37758546 - 37758476
Alignment:
| Q |
88 |
gtggcagagattctatgcaggctccccgtcaggttcctcctacaactacgatgcctcagtaagtccttgaa |
158 |
Q |
| |
|
|||||||| |||||||| ||||| || |||| ||| ||| ||||||| ||||||||| | ||||||||||| |
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| T |
37758546 |
gtggcagaaattctatgtaggcttcctgtcaagttactcttacaactccgatgcctctgcaagtccttgaa |
37758476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 209
Target Start/End: Original strand, 19118196 - 19118380
Alignment:
| Q |
25 |
ctcttatgttcacttttcatctcttccgacccaccaatgttgcccgaactcccattcgaactagtggcagagattctatgcaggctccccgtcaggttcc |
124 |
Q |
| |
|
|||||||||||||||||||||| | | |||||| | ||||||| ||||| |||||||| |||||||||||||| |||||||| ||||| | | ||| |
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|
| T |
19118196 |
ctcttatgttcacttttcatctgcttctccccaccgccgctgcccgatctcccgttcgaactggtggcagagattctgtgcaggcttcccgtgaagctcc |
19118295 |
T |
|
| Q |
125 |
tcctacaactacgatgcctcagtaagtccttgaaaacccttatttctgatccaaagttcgctaagaaacaccttcgcttatcaac |
209 |
Q |
| |
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|| ||||||| ||||| | ||||||||| | || ||||| ||||| ||||| || ||||| ||||||||||||||| ||||||| |
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| T |
19118296 |
tcatacaacttcgatgtcaaagtaagtccctcaataccctaatttccgatcccaaattcgcaaagaaacaccttcgcctatcaac |
19118380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 209
Target Start/End: Original strand, 19125545 - 19125689
Alignment:
| Q |
65 |
tgcccgaactcccattcgaactagtggcagagattctatgcaggctccccgtcaggttcctcctacaactacgatgcctcagtaagtccttgaaaaccct |
164 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||| |||||||| ||||| | | ||||| ||||||| ||||| | ||||||||| | || ||||| |
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| T |
19125545 |
tgcccgatctcccattcgaactggtcgcagagattctgtgcaggcttcccgtgaagctcctcgtacaacttcgatgtcagagtaagtccctcaataccct |
19125644 |
T |
|
| Q |
165 |
tatttctgatccaaagttcgctaagaaacaccttcgcttatcaac |
209 |
Q |
| |
|
||||||||||| | |||| ||||||||||||||| ||||||| |
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| T |
19125645 |
aatttctgatcccatcttcgtgaagaaacaccttcgcctatcaac |
19125689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 7169472 - 7169399
Alignment:
| Q |
146 |
gtaagtccttgaaaacccttatttctgatccaaagttcgctaagaaacaccttcgcttatcaaccacgcgccac |
219 |
Q |
| |
|
||||||||| |||| | ||||| || ||| |||| ||||||||||| ||||||||||| |||||||||| |||| |
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| T |
7169472 |
gtaagtcctggaaatctcttatctccgattcaaaattcgctaagaatcaccttcgcttgtcaaccacgctccac |
7169399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 33037470 - 33037523
Alignment:
| Q |
166 |
atttctgatccaaagttcgctaagaaacaccttcgcttatcaaccacgcgccac |
219 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||| | |||| |||||||||| |
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|
| T |
33037470 |
atttctgatcctaaattcgctaagaaacatcttcgcatgtcaaacacgcgccac |
33037523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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