View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2357_high_20 (Length: 292)

Name: NF2357_high_20
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2357_high_20
NF2357_high_20
[»] chr4 (4 HSPs)
chr4 (11-271)||(23587685-23587945)
chr4 (11-271)||(23596537-23596797)
chr4 (17-263)||(54396387-54396633)
chr4 (31-75)||(35132600-35132644)
[»] chr7 (7 HSPs)
chr7 (11-254)||(8102640-8102883)
chr7 (37-271)||(39985602-39985836)
chr7 (43-271)||(8017397-8017625)
chr7 (124-263)||(8382941-8383080)
chr7 (122-263)||(8581664-8581805)
chr7 (136-257)||(7877810-7877931)
chr7 (34-62)||(8602139-8602167)
[»] chr2 (6 HSPs)
chr2 (37-254)||(17716665-17716882)
chr2 (37-254)||(17717926-17718146)
chr2 (124-244)||(17622010-17622130)
chr2 (37-220)||(17705716-17705899)
chr2 (70-254)||(17666694-17666878)
chr2 (124-244)||(17704120-17704240)
[»] chr1 (1 HSPs)
chr1 (172-257)||(34466906-34466991)
[»] chr6 (1 HSPs)
chr6 (148-248)||(11209371-11209471)


Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 23587685 - 23587945
Alignment:
Q  11 gtgagaagaacgttcttattttcgatcttggtggtggaacttttgatgtttcactacttactattgaagaaggtatctttgaggtgaaagctacagctgg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||    
T  23587685 gtgagaagaacgttcttattttcgatcttggtggtggaacttttgatgtttccctacttactattgaggaaggtatctttgaggtcaaagctacagctgg 23587784  T
Q  111 tgatacacatttgggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatcca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23587785 tgatacacatttgggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatcca 23587884  T
Q  211 agggctcttagaagattgagaactgcttgcgagagagctaagaggaccctttcctctactg 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23587885 agggctcttagaagattgagaactgcttgcgagagagctaagaggaccctttcctctactg 23587945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 23596537 - 23596797
Alignment:
Q  11 gtgagaagaacgttcttattttcgatcttggtggtggaacttttgatgtttcactacttactattgaagaaggtatctttgaggtgaaagctacagctgg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  23596537 gtgagaagaacgttcttattttcgatcttggtggtggaacttttgatgtttcacttcttactattgaggaaggtatctttgaggtgaaagctacagctgg 23596636  T
Q  111 tgatacacatttgggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatcca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23596637 tgatacacatttgggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaagatattagtggaaatcca 23596736  T
Q  211 agggctcttagaagattgagaactgcttgcgagagagctaagaggaccctttcctctactg 271  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||    
T  23596737 agggctcttagaaggttgagaactgcttgtgagagagctaagaggactctttcctctactg 23596797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 54396633 - 54396387
Alignment:
Q  17 agaacgttcttattttcgatcttggtggtggaacttttgatgtttcactacttactattgaagaaggtatctttgaggtgaaagctacagctggtgatac 116  Q
    ||||||| |||||||| ||  | || ||||||||||| |||||||| || ||||||||||||||||| ||||| || ||||||||||| |||||||||||    
T  54396633 agaacgtgcttatttttgacttgggaggtggaactttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatac 54396534  T
Q  117 acatttgggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggct 216  Q
     ||| | || |||||||||||||||||||| |||||||| |||||||||   || || | |||||| |||||||||||||||||||| ||| |||| |||    
T  54396533 tcatcttggtggtgaagattttgataacagaatggtgaatcattttgtttcggagtttaggaggaaaaataagaaggatattagtggtaatgcaagagct 54396434  T
Q  217 cttagaagattgagaactgcttgcgagagagctaagaggaccctttc 263  Q
     | || ||||| ||||| ||||| |||||||||||||| || |||||    
T  54396433 ttgaggagattaagaacagcttgtgagagagctaagagaacactttc 54396387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 35132644 - 35132600
Alignment:
Q  31 ttcgatcttggtggtggaacttttgatgtttcactacttactatt 75  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||    
T  35132644 ttcgatcttggtggtggcacttttgatgtttcaatacttactatt 35132600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 8102883 - 8102640
Alignment:
Q  11 gtgagaagaacgttcttattttcgatcttggtggtggaacttttgatgtttcactacttactattgaagaaggtatctttgaggtgaaagctacagctgg 110  Q
    |||||||||||||  | || || ||| | |||||||| ||||||||||| ||||| |||||||||||||| ||||| ||||| || || ||||| || ||    
T  8102883 gtgagaagaacgtgttgatctttgatttgggtggtggtacttttgatgtgtcacttcttactattgaagagggtatatttgaagttaaggctactgcagg 8102784  T
Q  111 tgatacacatttgggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatcca 210  Q
    |||||| ||| | || |||||||||||||||||||| ||||| | ||||||||||||||| || ||||||||||| |||||||||||||| ||||| ||     
T  8102783 tgatacccatcttggtggtgaagattttgataacagaatggttacccattttgttcaagagtttaagaggaagaacaagaaggatattagcggaaaccct 8102684  T
Q  211 agggctcttagaagattgagaactgcttgcgagagagctaagag 254  Q
    ||||| ||||| ||||||||||| || || |||||||| |||||    
T  8102683 agggcacttaggagattgagaaccgcatgtgagagagcgaagag 8102640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 271
Target Start/End: Complemental strand, 39985836 - 39985602
Alignment:
Q  37 cttggtggtggaacttttgatgtttcactacttactattgaagaaggtatctttgaggtgaaagctacagctggtgatacacatttgggaggtgaagatt 136  Q
    ||||||||||| ||||||||||| ||  | || ||||||||||| |||||||||||||||||||| ||||| || || || ||| | |||||||| ||||    
T  39985836 cttggtggtggtacttttgatgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagccggagacacccatcttggaggtgaggatt 39985737  T
Q  137 ttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaagattgagaactgc 236  Q
    |||| ||||| ||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||||| || || || |||||||| || ||||| |||||    
T  39985736 ttgacaacagaatggtgaaccactttgttcaagagttcaagagaaagaacaagaaggacatcagtggcaaccccagagctcttaggaggttgaggactgc 39985637  T
Q  237 ttgcgagagagctaagaggaccctttcctctactg 271  Q
    ||| || ||||| ||||| || || || |||||||    
T  39985636 ttgtgaaagagcgaagagaactctctcttctactg 39985602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 43 - 271
Target Start/End: Original strand, 8017397 - 8017625
Alignment:
Q  43 ggtggaacttttgatgtttcactacttactattgaagaaggtatctttgaggtgaaagctacagctggtgatacacatttgggaggtgaagattttgata 142  Q
    ||||| ||||||||||| || || |||||||||||||| ||||| ||||| || || ||||| ||||||||||| ||| | || |||||||||||||| |    
T  8017397 ggtggtacttttgatgtgtctcttcttactattgaagagggtatttttgaagttaaggctactgctggtgatacccatcttggtggtgaagattttgaca 8017496  T
Q  143 acaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaagattgagaactgcttgcga 242  Q
    |||| ||||| || ||||||||||| || || ||||||||||| |||||||||||||||||||| || || || ||||| || ||||| || ||||| ||    
T  8017497 acagaatggttaatcattttgttcaggagtttaagaggaagaacaagaaggatattagtggaaaccctagagcacttaggaggttgaggacagcttgtga 8017596  T
Q  243 gagagctaagaggaccctttcctctactg 271  Q
    |||||| ||||| || || || |||||||    
T  8017597 gagagcgaagagaactctctcttctactg 8017625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 263
Target Start/End: Original strand, 8382941 - 8383080
Alignment:
Q  124 ggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaa 223  Q
    ||||||||||| || |||||||| || |||||  | |||||| | || |||||||||||| |||| ||||| |||||||| || |||| |||||||||||    
T  8382941 ggaggtgaagacttagataacagaatcgtgaagtactttgttgacgagttcaagaggaagcataataaggacattagtgggaacccaaaggctcttagaa 8383040  T
Q  224 gattgagaactgcttgcgagagagctaagaggaccctttc 263  Q
    | || ||||| ||||||||||| || || ||||| |||||    
T  8383041 ggttaagaacggcttgcgagagggcaaaaaggacactttc 8383080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 263
Target Start/End: Complemental strand, 8581805 - 8581664
Alignment:
Q  122 tgggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttag 221  Q
    ||||||| ||||||||||||||||| |||||||| || |||||    || |||||||| ||  ||||  |||| |||| |||||||||||  ||  ||||    
T  8581805 tgggaggggaagattttgataacagaatggtgaatcactttgtgtcggagttcaagagaaaacataaagaggagattattggaaatccaaaagccattag 8581706  T
Q  222 aagattgagaactgcttgcgagagagctaagaggaccctttc 263  Q
    ||| ||||| |||||||| |||||||| || ||||| |||||    
T  8581705 aaggttgaggactgcttgtgagagagcgaaaaggacactttc 8581664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 257
Target Start/End: Original strand, 7877810 - 7877931
Alignment:
Q  136 tttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaagattgagaactg 235  Q
    ||||||||||| ||| |||||||||| ||    || || ||||||||||||||   ||| ||| ||||||| || ||||| ||||| || ||||||||||    
T  7877810 tttgataacagaatgttgaaccatttagtgatggagtttaagaggaagaataaagtggacattggtggaaacccgagggcccttaggaggttgagaactg 7877909  T
Q  236 cttgcgagagagctaagaggac 257  Q
    | || ||||| ||||| |||||    
T  7877910 catgtgagagggctaaaaggac 7877931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 8602167 - 8602139
Alignment:
Q  34 gatcttggtggtggaacttttgatgtttc 62  Q
    |||||||||||||||||||||||||||||    
T  8602167 gatcttggtggtggaacttttgatgtttc 8602139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 254
Target Start/End: Original strand, 17716665 - 17716882
Alignment:
Q  37 cttggtggtggaacttttgatgtttcactacttactattgaagaaggtatctttgaggtgaaagctacagctggtgatacacatttgggaggtgaagatt 136  Q
    ||||||||||| ||||||||||| ||  | || |||||||||||  ||| |||| |||| ||||||||||| || ||  | ||| | |||||||| ||||    
T  17716665 cttggtggtggtacttttgatgtctctttgctaactattgaagagtgtaactttcaggttaaagctacagccggagacgcccatcttggaggtgaggatt 17716764  T
Q  137 ttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaagattgagaactgc 236  Q
    || ||||||| ||||||||||| ||||||| ||| |||||||| ||||| |||||||| |||||||| || ||||| |||||||  || ||||| |||||    
T  17716765 ttaataacagaatggtgaaccactttgttcgagagttcaagagaaagaacaagaaggacattagtggcaacccaagagctcttatgaggttgaggactgc 17716864  T
Q  237 ttgcgagagagctaagag 254  Q
    ||| ||||| || |||||    
T  17716865 ttgtgagagggcgaagag 17716882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 37 - 254
Target Start/End: Original strand, 17717926 - 17718146
Alignment:
Q  37 cttggtggtggaacttttgatgtttcactact---tactattgaagaaggtatctttgaggtgaaagctacagctggtgatacacatttgggaggtgaag 133  Q
    ||||||||||| ||||||||||| ||  | ||   ||||||||||||  ||| |||| |||| ||||||||||| || ||  | ||| | |||||||| |    
T  17717926 cttggtggtggtacttttgatgtctctttgctaactactattgaagagtgtaactttcaggttaaagctacagccggagacgcccatcttggaggtgagg 17718025  T
Q  134 attttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctctta-gaagattgagaa 232  Q
    ||||| ||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| || ||||| ||||||| |||| ||||| |    
T  17718026 attttaataacagaatggtgaaccactttgttcaagagttcaagagaaagaacaagaaggacattagtggcaacccaagagctcttatgaag-ttgagga 17718124  T
Q  233 ctgcttgcgagagagctaagag 254  Q
    ||||||| ||||| || |||||    
T  17718125 ctgcttgtgagagggcgaagag 17718146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 244
Target Start/End: Original strand, 17622010 - 17622130
Alignment:
Q  124 ggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaa 223  Q
    |||||||| |||||| ||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||||| || ||||| |||||||  |    
T  17622010 ggaggtgaggattttaataacagaatggtgaaccactttgttcaagagttcaagagaaagaacaagaaggacatcagtggcaacccaagagctcttatga 17622109  T
Q  224 gattgagaactgcttgcgaga 244  Q
    | ||||| |||||||| ||||    
T  17622110 ggttgaggactgcttgtgaga 17622130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 220
Target Start/End: Original strand, 17705716 - 17705899
Alignment:
Q  37 cttggtggtggaacttttgatgtttcactacttactattgaagaaggtatctttgaggtgaaagctacagctggtgatacacatttgggaggtgaagatt 136  Q
    ||||||||||| ||||||||||  ||  | || ||| |||||||  || || ||||||| ||||||| | | || || || ||| | |||||||| ||||    
T  17705716 cttggtggtgggacttttgatgcctctttgctaacttttgaagagagtgtcgttgaggttaaagctatatccggagacacccatcttggaggtgaggatt 17705815  T
Q  137 ttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctctta 220  Q
    || ||||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||| |||||||| || ||| | |||||||    
T  17705816 ttaataacagaatggtgaaccactttgtttaagagttcaagagaaagaagaagaaggacattagtggcaacccatgagctctta 17705899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 254
Target Start/End: Original strand, 17666694 - 17666878
Alignment:
Q  70 actattgaagaaggtatctttgaggtgaaagctacagctggtgatacacatttgggaggtgaagattttgataacaggatggtgaaccattttgttcaag 169  Q
    ||||||||||| |||||| ||| ||| ||||||||| | || ||  | ||| | |||||||| |||||| ||||||| |||||||| || ||||||||||    
T  17666694 actattgaagagggtatcattggggttaaagctacaaccggagacccccatcttggaggtgaggattttaataacagaatggtgaatcactttgttcaag 17666793  T
Q  170 aattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaagattgagaactgcttgcgagagagctaagag 254  Q
    | ||||| || ||||| || ||||| || ||||| || ||||| |||||||  || ||| | |||||||| ||||| || |||||    
T  17666794 agttcaaaagaaagaacaacaaggacatcagtggcaacccaagagctcttatgaggttggggactgcttgtgagagggcgaagag 17666878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 244
Target Start/End: Original strand, 17704120 - 17704240
Alignment:
Q  124 ggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaa 223  Q
    |||||||| |||||| ||||||| ||||||||| | ||||||||||| |||||||| ||||| | |||||| || |||||  | | ||| |||||||  |    
T  17704120 ggaggtgaggattttaataacagaatggtgaactactttgttcaagagttcaagagaaagaacaggaaggacatcagtggcgaccaaagagctcttatga 17704219  T
Q  224 gattgagaactgcttgcgaga 244  Q
    | ||||| |||||||| ||||    
T  17704220 ggttgaggactgcttgtgaga 17704240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 257
Target Start/End: Original strand, 34466906 - 34466991
Alignment:
Q  172 ttcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaagattgagaactgcttgcgagagagctaagaggac 257  Q
    |||||||||||| |||| ||||||||||||||||| || || ||| | || || ||||||||||| |||||||  || ||||||||    
T  34466906 ttcaagaggaagcataataaggatattagtggaaaccctagagctttgaggaggttgagaactgcgtgcgagaatgcaaagaggac 34466991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 11209471 - 11209371
Alignment:
Q  148 atggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaagattgagaactgcttgcgagagag 247  Q
    |||||||||||||||||  |||| |||  ||||||| | || | ||| ||||||||||||||||| || ||||| ||  |||  ||||||||||||||||    
T  11209471 atggtgaaccattttgtgaaagagttcttgaggaaggaaaaaatggacattagtggaaatccaagagcccttaggaggctgaagactgcttgcgagagag 11209372  T
Q  248 c 248  Q
    |    
T  11209371 c 11209371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University