View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2357_high_21 (Length: 290)
Name: NF2357_high_21
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 23 - 276
Target Start/End: Original strand, 36236516 - 36236762
Alignment:
| Q |
23 |
cacagattgtcaatattctaaaacaa-ctattgtattgtatnnnnnnnntggtctattatttt-gtcaaatccaacattgacaccattcacttaccaaca |
120 |
Q |
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| T |
36236516 |
cacagattgtcaatattctaaaacaatctattgtattgtataaaaaaa-tggtctattatttttgtcaaatccaacattgacactattcacttaccaaca |
36236614 |
T |
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| Q |
121 |
gaaggacgacgaacttgagttacacttagcattttgatcaatggatgttatttgnnnnnnnnnnnnnnncaataaacaaatatcaatgcctactttatta |
220 |
Q |
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| T |
36236615 |
gaa---cgacgaacttgagttacacttagcattttgatcaatggatgttatttgtttgtttttt-----caatagacaaatatcaatgcctactttatta |
36236706 |
T |
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| Q |
221 |
ggaggaagaggtaaatgttaaccacatgatagaactctgatcctccataataattc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36236707 |
ggaggaagaggtaaatgttaaccacatgatagaactctgatcctccataataattc |
36236762 |
T |
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