View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2357_high_22 (Length: 282)
Name: NF2357_high_22
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 41553522 - 41553779
Alignment:
| Q |
9 |
gaagaatatgtcagacattgataaaaaggtacaatataatgaaattgacataataatatctattaaaagtcgaaagatttatagttttgcaattagccta |
108 |
Q |
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| T |
41553522 |
gaagaaaatgtcagacattgataaaaaggtacaatataatgaaattgacataataatatctattaaaagtcgaaagatttatagttttgcaattagccta |
41553621 |
T |
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| Q |
109 |
tagttggtttatttgaaatttgcaacttctaattgcttttcatttagccatatgtagaggaaagcaagaaaataaaggnnnnnnncaaagaagcaatgat |
208 |
Q |
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| T |
41553622 |
tagttggtttatttgaaatttgcaacttctaattgcttttcatttagccatatgtagaggaaagcaagaaaataaaggaaaaaaacaaagaagcaatgat |
41553721 |
T |
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| Q |
209 |
cattgacattaaacagaagagcacccaagatcttaagagggatgaaaagaggcctaat |
266 |
Q |
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| T |
41553722 |
cattgacattaaacagaagagcacccaagatcttaagagggatgaaaagaggcctaat |
41553779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 34257379 - 34257445
Alignment:
| Q |
120 |
tttgaaatttgcaacttctaattgcttttcatttagccatatgtagaggaaagcaagaaaataaagg |
186 |
Q |
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| T |
34257379 |
tttgaaatttgccacttctaattacatttcatgtagccatatgaagaggaaagcatgaagataaagg |
34257445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 254
Target Start/End: Original strand, 37558206 - 37558376
Alignment:
| Q |
85 |
atttatagttttgcaattagcctatagttggtttatttgaaatttgcaacttctaattgcttttc-atttagccatatgtagaggaaagcaagaaaataa |
183 |
Q |
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| T |
37558206 |
atttatatttttgcaattagcctctactttgtttgtttgaaacttaccatttctaattacttttttatgtagccatatgtggaggaaagcaggaagataa |
37558305 |
T |
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| Q |
184 |
aggnnnnnnncaaagaagcaatgatcattgacattaaacagaagagcacccaagatcttaagagggatgaa |
254 |
Q |
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| T |
37558306 |
aggaaaaacagaaggaagcaatgatcactgacaataaacagaagagcactgaagatcttaagaaggatgaa |
37558376 |
T |
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