View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2357_high_27 (Length: 250)
Name: NF2357_high_27
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 27446353 - 27446226
Alignment:
| Q |
1 |
atacaatggccagacctgttcctccatcaataatcattacatgcctaatgtagaaaaaagaaaaggagattgtgatactttacatttcttatgtttgaaa |
100 |
Q |
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| T |
27446353 |
atacaatggccagacctgttcctccatcaataatcattacatgcctaatgtagaaaaaagaaaaggaaattgtgatattttacatttcttatgtttgaaa |
27446254 |
T |
|
| Q |
101 |
gatttaaattatattttatcctttaattt |
129 |
Q |
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| T |
27446253 |
ga-ttaaattatattttatcctttaattt |
27446226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 27445988 - 27445875
Alignment:
| Q |
127 |
tttggtggagtgtagaagttacacattcactggtatgtatccggtctcatccaaggataatagaatatgaaggtttgccgtctataacaaagaaagtgaa |
226 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27445988 |
tttggtgaagtgtagaagttacacattcactggtatgtatccggtctcagccaagaataatagaatatgaaggtttgccgtctataacaaagaaagtgaa |
27445889 |
T |
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| Q |
227 |
tctcacatcctttg |
240 |
Q |
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| T |
27445888 |
tctcacatcctttg |
27445875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 46305692 - 46305598
Alignment:
| Q |
127 |
tttggtggagtgtagaagttacacattcactggtatgtatccggtctcatccaaggataatagaatatgaaggtttgccgtctataacaaagaaag |
222 |
Q |
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| T |
46305692 |
tttggtggagtgtagaagt-acacattcattgctatgtatccaatctctcccaaggaagatagagtatgaaggttggccgtctataacaaagaaag |
46305598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 7079 - 7038
Alignment:
| Q |
127 |
tttggtggagtgtagaagttacacattcactggtatgtatcc |
168 |
Q |
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||||||| ||||||| || ||||||||||||||||||||||| |
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| T |
7079 |
tttggtgaagtgtagcagctacacattcactggtatgtatcc |
7038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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