View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2357_high_30 (Length: 249)

Name: NF2357_high_30
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2357_high_30
NF2357_high_30
[»] chr1 (10 HSPs)
chr1 (54-165)||(24241478-24241585)
chr1 (54-156)||(21356803-21356901)
chr1 (54-165)||(16253029-16253136)
chr1 (5-157)||(41942789-41942937)
chr1 (54-165)||(39744169-39744276)
chr1 (95-165)||(48503922-48503992)
chr1 (54-165)||(2344969-2345077)
chr1 (66-165)||(34773431-34773528)
chr1 (66-160)||(38746031-38746122)
chr1 (4-125)||(8971469-8971587)
[»] chr8 (9 HSPs)
chr8 (54-166)||(42056679-42056787)
chr8 (4-165)||(30208199-30208357)
chr8 (8-157)||(35179168-35179314)
chr8 (54-166)||(39402026-39402137)
chr8 (8-155)||(5594794-5594937)
chr8 (4-159)||(1162067-1162217)
chr8 (5-165)||(40719844-40720005)
chr8 (54-147)||(42921385-42921474)
chr8 (8-166)||(31333116-31333271)
[»] chr7 (7 HSPs)
chr7 (8-165)||(34998528-34998683)
chr7 (54-156)||(8541440-8541539)
chr7 (108-160)||(32676800-32676852)
chr7 (108-165)||(39188008-39188065)
chr7 (119-154)||(46023139-46023174)
chr7 (119-165)||(45627478-45627524)
chr7 (54-165)||(10544991-10545100)
[»] chr2 (10 HSPs)
chr2 (9-165)||(37721449-37721602)
chr2 (54-165)||(3870024-3870135)
chr2 (54-165)||(11028779-11028887)
chr2 (54-165)||(38879517-38879625)
chr2 (54-165)||(28734070-28734177)
chr2 (68-165)||(36400857-36400952)
chr2 (54-165)||(3647418-3647526)
chr2 (119-165)||(6512145-6512191)
chr2 (117-157)||(30706211-30706251)
chr2 (4-38)||(34480077-34480111)
[»] chr3 (8 HSPs)
chr3 (54-157)||(44880262-44880361)
chr3 (4-160)||(2008404-2008558)
chr3 (54-165)||(22220210-22220318)
chr3 (54-156)||(1994850-1994948)
chr3 (8-155)||(22831128-22831271)
chr3 (93-165)||(26466366-26466438)
chr3 (93-165)||(39056909-39056981)
chr3 (6-145)||(28297695-28297832)
[»] chr5 (13 HSPs)
chr5 (66-165)||(33758794-33758889)
chr5 (63-146)||(23151439-23151518)
chr5 (54-156)||(34849451-34849550)
chr5 (4-145)||(37872151-37872291)
chr5 (54-165)||(2976446-2976551)
chr5 (54-155)||(30319817-30319915)
chr5 (168-225)||(29002441-29002498)
chr5 (8-165)||(20524557-20524711)
chr5 (54-157)||(3454259-3454358)
chr5 (5-165)||(10719746-10719904)
chr5 (128-166)||(37872302-37872340)
chr5 (112-157)||(2467013-2467058)
chr5 (120-165)||(21239430-21239475)
[»] scaffold0095 (1 HSPs)
scaffold0095 (54-166)||(35365-35476)
[»] chr4 (8 HSPs)
chr4 (5-167)||(46550655-46550815)
chr4 (8-166)||(47541763-47541919)
chr4 (54-157)||(41464802-41464903)
chr4 (111-166)||(36364917-36364972)
chr4 (14-165)||(17056615-17056762)
chr4 (93-160)||(15827160-15827229)
chr4 (128-165)||(52920160-52920197)
chr4 (110-156)||(46381588-46381634)
[»] chr6 (3 HSPs)
chr6 (66-165)||(7080153-7080250)
chr6 (67-165)||(25336928-25337023)
chr6 (54-165)||(2141240-2141348)
[»] scaffold1339 (1 HSPs)
scaffold1339 (54-165)||(57-165)
[»] scaffold0288 (1 HSPs)
scaffold0288 (93-165)||(18091-18163)
[»] scaffold0009 (1 HSPs)
scaffold0009 (93-165)||(25688-25760)
[»] scaffold0830 (1 HSPs)
scaffold0830 (54-140)||(5379-5462)


Alignment Details
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 24241585 - 24241478
Alignment:
Q  54 aataataaggaagaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgac 153  Q
    ||||||||||| ||||||||||||||||||||||||||    ||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  24241585 aataataaggaggaaattgataaaaaagatgattgaat----attttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtcatgtgac 24241490  T
Q  154 catggaataata 165  Q
    ||||||| ||||    
T  24241489 catggaagaata 24241478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 21356901 - 21356803
Alignment:
Q  54 aataataaggaagaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgac 153  Q
    |||||||| ||  |||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21356901 aataataatgagaaaattgataaaaaagatgattgaat----attttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgac 21356806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 16253136 - 16253029
Alignment:
Q  54 aataataaggaagaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgac 153  Q
    ||||||||||| ||||||||||||||||||||||||||    ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||     
T  16253136 aataataaggaggaaattgataaaaaagatgattgaat----attttgaggagaatctttttatgtgtgtctccaaacattattgatttggtcttgtgaa 16253041  T
Q  154 catggaataata 165  Q
    ||||||| ||||    
T  16253040 catggaagaata 16253029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 41942937 - 41942789
Alignment:
Q  5 gaccaaagaaaaagtgtttggtcacaaatacataaaggaatannnnnnnaataataaggaagaaattgataaaaaagatgattgaattaatattttgaag 104  Q
    ||||||||| |||||||||||||| | | |||||||| | ||       ||||||||||| |||||||||||||| |||||||||||    |||| ||||    
T  41942937 gaccaaagataaagtgtttggtcatacacacataaagaagtatttttttaataataaggaggaaattgataaaaatgatgattgaat----atttcgaag 41942842  T
Q  105 agaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccatg 157  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  41942841 agaatctttttatgtatgtgtccaaacattattgatttggtcttgtgaccatg 41942789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 165
Target Start/End: Original strand, 39744169 - 39744276
Alignment:
Q  54 aataataaggaagaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgac 153  Q
    ||||||||||| |||| |||||||||| |||||||| |    ||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39744169 aataataaggaggaaaatgataaaaaaaatgattgact----attctgagaagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgac 39744264  T
Q  154 catggaataata 165  Q
    ||| ||| ||||    
T  39744265 catagaagaata 39744276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 48503992 - 48503922
Alignment:
Q  95 tattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccatggaataata 165  Q
    |||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| ||| ||||||| ||||    
T  48503992 tattttgatgagaatccttttatatgtgtgtccaaatattattgatttggtcttatgaacatggaagaata 48503922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 2345077 - 2344969
Alignment:
Q  54 aataataaggaagaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtg--tgtccaaacattattgatttggtcttgtg 151  Q
    ||||| ||||| |||||||||||||||||||||||||||    |||| |||| ||| ||||||| ||||  | |||||||||||||||||||||||||||    
T  2345077 aataagaaggaggaaattgataaaaaagatgattgaatt----ttttaaagaaaat-tttttatgtgtgcttatccaaacattattgatttggtcttgtg 2344983  T
Q  152 accatggaataata 165  Q
    |||| |||| ||||    
T  2344982 accaaggaagaata 2344969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 165
Target Start/End: Original strand, 34773431 - 34773528
Alignment:
Q  66 gaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtgt--gtccaaacattattgatttggtcttgtgaccatggaataa 163  Q
    |||||| |||||||| ||||||||||    ||||||| |||||||||||||| |||||  || ||||||||||||| |||||||||||| ||||||| ||    
T  34773431 gaaattaataaaaaatatgattgaat----attttgaggagaatctttttatgtgtgtatgtgcaaacattattgagttggtcttgtgatcatggaagaa 34773526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 38746031 - 38746122
Alignment:
Q  66 gaaattgataaaaaagatgattgaattaatattttgaagagaatctttttata--tgtgtgtccaaacattattgatttggtcttgtgaccatggaa 160  Q
    |||||||| || ||||||||||||||    ||||||| |||||||| |||||   |||||||||||| |||||||||||||||||||||| ||||||    
T  38746031 gaaattgaaaacaaagatgattgaat----attttgaggagaatctatttatgggtgtgtgtccaaa-attattgatttggtcttgtgacgatggaa 38746122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 8971587 - 8971469
Alignment:
Q  4 ggaccaaagaaaaagtgtttggtcacaaatacataaaggaatannnnnnnaataataaggaagaaattgataaaaaagatgattgaattaatattttgaa 103  Q
    |||||||| |||||||||| ||||| | |||||||||  | ||       ||||||||||| ||| ||||||||||| ||   ||| | ||||||||||     
T  8971587 ggaccaaaaaaaaagtgttcggtcatacatacataaataagtatttttttaataataaggaggaacttgataaaaaaaat---tgattaaatattttgag 8971491  T
Q  104 gagaatctttttatatgtgtgt 125  Q
    |||||| |||||||||||||||    
T  8971490 gagaatatttttatatgtgtgt 8971469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 42056787 - 42056679
Alignment:
Q  54 aataataaggaagaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgac 153  Q
    |||||||||||  |||||||||||||||||||||||||    ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  42056787 aataataaggagaaaattgataaaaaagatgattgaat----attttaaagagaatctttttatgtttgtgtccaaacattattgatttggtcttgtgac 42056692  T
Q  154 catggaataatat 166  Q
    ||||||| |||||    
T  42056691 catggaagaatat 42056679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 165
Target Start/End: Complemental strand, 30208357 - 30208199
Alignment:
Q  4 ggaccaaagaaaaagtgtttggtcacaaatacataaaggaatannnnnnnaataataaggaagaaattgataaaaaagatgattgaattaatattttgaa 103  Q
    ||||||||||||||||||||||||||| | |||||||| | |        ||||||||||| ||||||||||||||||||||||||||      |||||     
T  30208357 ggaccaaagaaaaagtgtttggtcacacacacataaagaagtgtttttttaataataaggaggaaattgataaaaaagatgattgaata-----tttgag 30208263  T
Q  104 gagaatctttttat--atgtgtgtccaaacattattgatttggtcttgtgaccatggaataata 165  Q
    ||||||||||||||  || |||||||||||||||||||||||||||| ||||||||||| ||||    
T  30208262 gagaatctttttatgtatatgtgtccaaacattattgatttggtcttatgaccatggaagaata 30208199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 35179314 - 35179168
Alignment:
Q  8 caaagaaaaagtgtttggtcacaaatacataaaggaatannnnnnnaataataaggaagaaattgataaaaaagatgattgaattaatattttgaagaga 107  Q
    ||||||||||||||||||||||| |  ||||||| | ||       ||||||||| | ||||||||||||||| |  ||| | | ||||||||||  |||    
T  35179314 caaagaaaaagtgtttggtcacacacgcataaagaagtatttttttaataataagaaggaaattgataaaaaaaa--att-attgaatattttgagaaga 35179218  T
Q  108 atctttttatatgtgtgtccaaacattattgatttggtcttgtgaccatg 157  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35179217 atctttttatatgtgtgtccaaacattattgatttggtcttatgaccatg 35179168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 166
Target Start/End: Original strand, 39402026 - 39402137
Alignment:
Q  54 aataataaggaagaaattgataaaaaa-gatgattgaattaatattttgaagagaatctttttat--atgtgtgtccaaacattattgatttggtcttgt 150  Q
    ||||||||| ||||||||||||||||| |||||||||||    ||||||| ||||||||||||||  |||| ||| |||| |||||||||||||||||||    
T  39402026 aataataagaaagaaattgataaaaaaagatgattgaat----attttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgt 39402121  T
Q  151 gaccatggaataatat 166  Q
    |||||||||| |||||    
T  39402122 gaccatggaagaatat 39402137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 5594937 - 5594794
Alignment:
Q  8 caaagaaaaagtgtttggtcacaaatacataaaggaatannnnnnnaataataaggaagaaattgataaaaaagatgattgaattaatattttgaagaga 107  Q
    |||||||||||||||| |||||| | | |||||| | ||       ||||||||||| |||| |||||||||||||||||||||    |||||||  |||    
T  5594937 caaagaaaaagtgtttagtcacacacatataaagaagtatttttttaataataaggaggaaagtgataaaaaagatgattgaat----attttgagaaga 5594842  T
Q  108 atctttttatatgtgtgtccaaacattattgatttggtcttgtgacca 155  Q
    |||||| ||| |||||||||||| ||||||||||| ||||||||||||    
T  5594841 atctttatatgtgtgtgtccaaatattattgatttagtcttgtgacca 5594794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 1162067 - 1162217
Alignment:
Q  4 ggaccaaagaaaaagtgtttggtcacaaatacataaaggaatannnnnnnaataataaggaagaaattgataaaaaagatgattgaattaatattttgaa 103  Q
    |||| |||||||||||||||||||||| | |||||||| ||||       |||||||| || ||||||||||| |||||  |||||||    |||||||     
T  1162067 ggactaaagaaaaagtgtttggtcacacacacataaagaaatatttttttaataataaagaggaaattgataagaaagac-attgaat----attttgag 1162161  T
Q  104 gagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccatgga 159  Q
    ||||||| |||||| ||||||| |||| |||| |||||||||||||||| ||||||    
T  1162162 gagaatccttttatgtgtgtgttcaaatattactgatttggtcttgtgatcatgga 1162217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 165
Target Start/End: Original strand, 40719844 - 40720005
Alignment:
Q  5 gaccaaagaaaaagtgtttggtcacaaataca--taaaggaatannnnnnnaataataaggaagaaattgataaaaaa-gatgattgaattaatattttg 101  Q
    |||||||||||||||||||||||||| | |||  ||||| | ||       ||||||||||| ||||||||||||||| |||||||||||    ||||||    
T  40719844 gaccaaagaaaaagtgtttggtcacatacacacataaagaagtattttttaaataataaggaggaaattgataaaaaaagatgattgaat----attttg 40719939  T
Q  102 aagagaatctttttatatgtg--tgtccaaacattattgatttggtcttgtgaccatggaataata 165  Q
    | |||||||||||||| ||||  ||||||||||||||| ||||  |||| ||||||||||| ||||    
T  40719940 aggagaatctttttatgtgtgtgtgtccaaacattattaatttaatcttttgaccatggaagaata 40720005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 42921474 - 42921385
Alignment:
Q  54 aataataaggaagaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtct 147  Q
    ||||||||||| |||||||||||||||||||||||| |    |||||||  ||||||||||||||| ||||| ||||||||||| |||||||||    
T  42921474 aataataaggatgaaattgataaaaaagatgattgatt----attttgagaagaatctttttatatttgtgttcaaacattattaatttggtct 42921385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 31333116 - 31333271
Alignment:
Q  8 caaagaaaaagtgtttggtcacaaatacataaaggaatannnnnnnaataataaggaagaaattgataaaaaagatgattgaattaatattttgaagaga 107  Q
    |||||||| |||||||||||||| | |||||||| ||||       |||||||||||  ||| |||||||||||||||||||||    ||||| |  | |    
T  31333116 caaagaaatagtgtttggtcacacacacataaagaaatatttttttaataataaggagaaaactgataaaaaagatgattgaat----attttaagtaaa 31333211  T
Q  108 atctttttatatgtgtgt--ccaaacattattgatttggtcttgtgaccatggaataatat 166  Q
    |||||||||| |||||||  ||||||||| |||||||||||||||||| |||||| |||||    
T  31333212 atctttttatgtgtgtgtaaccaaacatt-ttgatttggtcttgtgactatggaagaatat 31333271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 34998683 - 34998528
Alignment:
Q  8 caaagaaaaagtgtttggtcacaaatacataaaggaatannnnnnnaataataaggaagaaattgataaaaaagatgattgaattaatattttgaagaga 107  Q
    |||||||||||| |||||||||| | |||||||| ||||       |||||||||||  |||||||||||||  ||||||||||    ||||||| ||||    
T  34998683 caaagaaaaagtatttggtcacacacacataaagaaatatttttttaataataaggagaaaattgataaaaataatgattgaat----attttgaggaga 34998588  T
Q  108 atctttttatatgtgtgt--ccaaacattattgatttggtcttgtgaccatggaataata 165  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||    
T  34998587 atctttttatatgtgtgtgtccaaacattattgatttggtcttgtgaccatggaagaata 34998528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 8541539 - 8541440
Alignment:
Q  54 aataataaggaagaaattgataaaaaaga-tgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtga 152  Q
    ||||||||||| ||||||||||||||| | |||||||||    ||||||| |||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  8541539 aataataaggaggaaattgataaaaaataatgattgaat----attttgaggagaatctttttacgtgtgtgttcaaacattattgatttggtcttgtga 8541444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 32676852 - 32676800
Alignment:
Q  108 atctttttatatgtgtgtccaaacattattgatttggtcttgtgaccatggaa 160  Q
    ||||||||| |||||| |||||||| |||||||||||||||||||||||||||    
T  32676852 atctttttacatgtgtatccaaacactattgatttggtcttgtgaccatggaa 32676800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 39188008 - 39188065
Alignment:
Q  108 atctttttatatgtgtgtccaaacattattgatttggtcttgtgaccatggaataata 165  Q
    ||||||||||  ||||||||||| | ||||||||||||||| ||||||||||| ||||    
T  39188008 atctttttatgcgtgtgtccaaatactattgatttggtcttctgaccatggaagaata 39188065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 154
Target Start/End: Complemental strand, 46023174 - 46023139
Alignment:
Q  119 tgtgtgtccaaacattattgatttggtcttgtgacc 154  Q
    |||||||||||||| |||||||||||||||||||||    
T  46023174 tgtgtgtccaaacaatattgatttggtcttgtgacc 46023139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 45627478 - 45627524
Alignment:
Q  119 tgtgtgtccaaacattattgatttggtcttgtgaccatggaataata 165  Q
    |||||||| ||||| ||||||||||||| ||||||||||||| ||||    
T  45627478 tgtgtgtcaaaacactattgatttggtcctgtgaccatggaagaata 45627524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 10545100 - 10544991
Alignment:
Q  54 aataataaggaagaaattgataaa--aaagatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtg 151  Q
    |||||||| || ||||||||||||  ||| ||||||||||    ||||| || | ||||||||||| ||||| |||||| | |||||||| |||||||||    
T  10545100 aataataaagaggaaattgataaataaaaaatgattgaat----attttaaaaataatctttttatgtgtgtctccaaatactattgattcggtcttgtg 10545005  T
Q  152 accatggaataata 165  Q
    | | ||||| ||||    
T  10545004 atcgtggaagaata 10544991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 37721602 - 37721449
Alignment:
Q  9 aaagaaaaagtgtttggtcacaaatacataaaggaatannnnnnnaataataaggaagaaattgataaaaaaga-tgattgaattaatattttgaagaga 107  Q
    |||||||||||||||||||||| | |||||||| | ||       ||||||||||| ||||||||||||||| | |||||||||    ||||||||||||    
T  37721602 aaagaaaaagtgtttggtcacacacacataaagaattatttttttaataataaggaggaaattgataaaaaaaaatgattgaat----attttgaagaga 37721507  T
Q  108 atctttttatatgtgtgtccaaacattattgatttggtcttgtgaccatggaataata 165  Q
    ||||||||||  | ||||||||| ||||||||||||||||||||||||||||| ||||    
T  37721506 atctttttatgcgcgtgtccaaatattattgatttggtcttgtgaccatggaagaata 37721449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 3870135 - 3870024
Alignment:
Q  54 aataataaggaagaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatat----gtgtgtccaaacattattgatttggtcttg 149  Q
    ||||||||||| ||||||||||||||||||||||||||    ||||||| |||||||||||||| |    ||||||| ||||||||||||||||||||||    
T  3870135 aataataaggaggaaattgataaaaaagatgattgaat----attttgaggagaatctttttatgtctgtgtgtgtcaaaacattattgatttggtcttg 3870040  T
Q  150 tgaccatggaataata 165  Q
    ||||||||||| ||||    
T  3870039 tgaccatggaagaata 3870024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 11028887 - 11028779
Alignment:
Q  54 aataataaggaagaaattgataaaaaa-gatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtga 152  Q
    ||||||||||| ||||||||||||||| |||||||||||    ||||| | |||||||||||||| |||||||||||||||||||||||||||||| |||    
T  11028887 aataataaggaggaaattgataaaaaaagatgattgaat----attttaaggagaatctttttatgtgtgtgtccaaacattattgatttggtcttttga 11028792  T
Q  153 ccatggaataata 165  Q
    | |||||| ||||    
T  11028791 cgatggaagaata 11028779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 38879625 - 38879517
Alignment:
Q  54 aataataaggaagaaattgataaaaaa-gatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtga 152  Q
    |||||| ||||  |||||||||||||| |||||||    ||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  38879625 aataatgaggagaaaattgataaaaaaagatgatt----taatattttgaggagaatctttttatgtgtgtgtccaaacattattaatttggtcttgtga 38879530  T
Q  153 ccatggaataata 165  Q
    | |||||| ||||    
T  38879529 ctatggaagaata 38879517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 165
Target Start/End: Original strand, 28734070 - 28734177
Alignment:
Q  54 aataataaggaagaaattgataaaaaa-gatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtga 152  Q
    |||||||| |||||||||||||||||| ||||| ||| |    ||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  28734070 aataataaagaagaaattgataaaaaaagatgagtgagt----attttgaggagaat-tttttatgtgtgtgtccaaacattattgatttggtcttgtga 28734164  T
Q  153 ccatggaataata 165  Q
    || ||||| ||||    
T  28734165 ccgtggaagaata 28734177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 36400952 - 36400857
Alignment:
Q  68 aattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtgtgtc--caaacattattgatttggtcttgtgaccatggaataata 165  Q
    ||||||||||||||||||||||||    ||||||| |||||||||||||| |||||||   ||||||||||||||||||||||| |||||||||| ||||    
T  36400952 aattgataaaaaagatgattgaat----attttgaggagaatctttttatgtgtgtgtgttcaaacattattgatttggtcttgagaccatggaagaata 36400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 3647526 - 3647418
Alignment:
Q  54 aataataaggaagaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgt--gtgtccaaacattattgatttggtcttgtg 151  Q
    ||||| |||||  |||||||||||||||||||||||||    ||||| |||||||| ||||||| |||  |||| |||||||||||||||||||||||||    
T  3647526 aataagaaggagaaaattgataaaaaagatgattgaat----attttaaagagaat-tttttatgtgttcgtgttcaaacattattgatttggtcttgtg 3647432  T
Q  152 accatggaataata 165  Q
    |||| |||| ||||    
T  3647431 accaaggaagaata 3647418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 6512145 - 6512191
Alignment:
Q  119 tgtgtgtccaaacattattgatttggtcttgtgaccatggaataata 165  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  6512145 tgtgtgtccaaacactattgatttggtcttgtgaccatggaataata 6512191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 30706211 - 30706251
Alignment:
Q  117 tatgtgtgtccaaacattattgatttggtcttgtgaccatg 157  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  30706211 tatgtgtgtccaaacactattgatttggtcttgtgaccatg 30706251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 34480077 - 34480111
Alignment:
Q  4 ggaccaaagaaaaagtgtttggtcacaaatacata 38  Q
    ||||||||||||||||||||||||||||| |||||    
T  34480077 ggaccaaagaaaaagtgtttggtcacaaacacata 34480111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 44880361 - 44880262
Alignment:
Q  54 aataataaggaagaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgac 153  Q
    ||||||||||| |||||||||||||||||||| |||||    ||||||| ||||||| |||||| ||||||| |||||||||||||||||||||||||||    
T  44880361 aataataaggaggaaattgataaaaaagatgactgaat----attttgaggagaatcgttttatgtgtgtgttcaaacattattgatttggtcttgtgac 44880266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 2008558 - 2008404
Alignment:
Q  4 ggaccaaagaaaaagtgtttggtcacaaatacataaaggaatannnnnnnaataataaggaagaaattgataaaaaagatgattgaattaatattttgaa 103  Q
    |||||||||||| ||||||||| |||| | |||||||  | ||       |||||||||||  |||||||||||||||||||||||||    |||||||     
T  2008558 ggaccaaagaaatagtgtttggccacacacacataaattagtatttttttaataataaggagaaaattgataaaaaagatgattgaat----attttgag 2008463  T
Q  104 gagaatctttttatatgtgtgt--ccaaacattattgatttggtcttgtgaccatggaa 160  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||||||| |||||||    
T  2008462 gagaatctttttatatgtgtgtgtccaaatattattgatttggtcttgtgatcatggaa 2008404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 22220318 - 22220210
Alignment:
Q  54 aataataaggaagaaattgataaaaaa-gatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtga 152  Q
    ||||||||||| ||||||||||||||| |||||||||||    |||||||  ||||||||||||| ||||||| ||||||||||||||||| |||| |||    
T  22220318 aataataaggaggaaattgataaaaaaagatgattgaat----attttgagaagaatctttttatgtgtgtgtacaaacattattgatttgatcttttga 22220223  T
Q  153 ccatggaataata 165  Q
    |||||||| ||||    
T  22220222 ccatggaagaata 22220210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 1994850 - 1994948
Alignment:
Q  54 aataataaggaagaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgac 153  Q
    |||||||| || | ||||||||||||||||||||||||    ||||| | |||||||||||| | ||| |||||||||||||||||||||||||||||||    
T  1994850 aataataaagaggtaattgataaaaaagatgattgaat----attttcaggagaatctttttgtgtgtttgtccaaacattattgatttggtcttgtgac 1994945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 22831128 - 22831271
Alignment:
Q  8 caaagaaaaagtgtttggtcacaaatacataaaggaatannnnnnnaataataaggaagaaattgataaaaaagatgattgaattaatattttgaagaga 107  Q
    |||||||||||||||| |||||| | | |||||| | ||       ||||||||||| |||| |||||||||||||||||||||    |||||||  |||    
T  22831128 caaagaaaaagtgtttagtcacacacatataaagaagtatttttttaataataaggaggaaagtgataaaaaagatgattgaat----attttgagaaga 22831223  T
Q  108 atctttttatatgtgtgtccaaacattattgatttggtcttgtgacca 155  Q
    |||||| ||| |||||||||||| ||||||||||| ||||||||||||    
T  22831224 atctttatatgtgtgtgtccaaatattattgatttagtcttgtgacca 22831271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 26466366 - 26466438
Alignment:
Q  93 aatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccatggaataata 165  Q
    |||||||| || ||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||| ||||    
T  26466366 aatattttaaaaagaatctttttatatatgtgttcaaacattattaatttgatcttgtgaccatggaagaata 26466438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 39056909 - 39056981
Alignment:
Q  93 aatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccatggaataata 165  Q
    |||||||||| || ||||||||||| |||||||||||||||||| |||||||||||| || ||||||| ||||    
T  39056909 aatattttgaggaaaatctttttatgtgtgtgtccaaacattatagatttggtcttgcgatcatggaagaata 39056981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 28297832 - 28297695
Alignment:
Q  6 accaaagaaaaagtgtttggtcacaaatacat--aaaggaatannnnnnnaataataaggaagaaattgataaaaaagatgattgaattaatattttgaa 103  Q
    ||||||||||||||||||||||||| ||||||  |||| ||||       |||||||| || ||||||||||||| | ||||| |    ||||| || |     
T  28297832 accaaagaaaaagtgtttggtcacagatacataaaaagaaatatttttttaataataaagaggaaattgataaaagaaatgatcg----aatatgttaag 28297737  T
Q  104 gagaatctttttatatgtgtgtccaaacattattgatttggt 145  Q
    |||||||||||||||| | ||||||||| |||||||||||||    
T  28297736 gagaatctttttatatatatgtccaaactttattgatttggt 28297695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 33758889 - 33758794
Alignment:
Q  66 gaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccatggaataata 165  Q
    ||||||||||||||||||||||||||    | ||||| |||||||||||||| |||||||||||||| |||||||||| |||||||||||||||| ||||    
T  33758889 gaaattgataaaaaagatgattgaat----agtttgaggagaatctttttatgtgtgtgtccaaacagtattgatttgatcttgtgaccatggaagaata 33758794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 23151439 - 23151518
Alignment:
Q  63 gaagaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtc 146  Q
    ||||||||||||||||| |||||||||||    ||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  23151439 gaagaaattgataaaaatgatgattgaat----attttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtc 23151518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 34849550 - 34849451
Alignment:
Q  54 aataataaggaagaaattgataaaaaa-gatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtga 152  Q
    |||||||||||  |||||||||||||| |||||||||||    ||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| |||    
T  34849550 aataataaggagaaaattgataaaaaaagatgattgaat----attttgaggagaatctttttatatgtgtgtcgaaacattattgatttcgtcttatga 34849455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 145
Target Start/End: Original strand, 37872151 - 37872291
Alignment:
Q  4 ggaccaaagaaaaagtgtttggtcacaaatacataaaggaatannnnnnnaataataaggaagaaattgataaaaaa-gatgattgaattaatattttga 102  Q
    |||||||||||||||| |||||||||| | |||||||  ||||       ||||||||||| ||||||||||||||| |||||||||||    |||||||    
T  37872151 ggaccaaagaaaaagtatttggtcacacacacataaaaaaatatatttttaataataaggaggaaattgataaaaaaagatgattgaat----attttga 37872246  T
Q  103 agagaatcttttta--tatgtgtgtccaaacattattgatttggt 145  Q
     |||||||||||||  | |||||||||||| ||||||||||||||    
T  37872247 tgagaatctttttatgtgtgtgtgtccaaatattattgatttggt 37872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 165
Target Start/End: Original strand, 2976446 - 2976551
Alignment:
Q  54 aataataaggaagaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgac 153  Q
    |||| ||| |||||||||||||||||| ||||||||||    ||||| | ||  ||||||||||  ||||||||||||| ||||||||||||||| ||||    
T  2976446 aatattaaagaagaaattgataaaaaaaatgattgaat----attttaaggaccatctttttat--gtgtgtccaaacactattgatttggtcttatgac 2976539  T
Q  154 catggaataata 165  Q
    ||||||| ||||    
T  2976540 catggaagaata 2976551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 30319915 - 30319817
Alignment:
Q  54 aataataaggaagaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtgtgt--ccaaacattattgatttggtcttgtg 151  Q
    ||||| ||||| ||||||||||||||||||||||||||    ||||| |||||||| ||||||| || | ||  ||||||||||||||||||||||||||    
T  30319915 aataagaaggaggaaattgataaaaaagatgattgaat----attttaaagagaat-tttttatgtgcgcgtatccaaacattattgatttggtcttgtg 30319821  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 29002498 - 29002441
Alignment:
Q  168 gtgtatggctttcccaacacttgatatgtcatctgagttgtagacatggttcaacttg 225  Q
    |||||||||||||||||||||||||||| ||| |||||||||||| || |||||||||    
T  29002498 gtgtatggctttcccaacacttgatatgccatttgagttgtagacgtgtttcaacttg 29002441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 20524557 - 20524711
Alignment:
Q  8 caaagaaaaagtgtttggtcacaaatacataaaggaatannnnnnn-aataataaggaagaaattgataaaaaagatgattgaattaatattttgaagag 106  Q
    |||| |||||||||||||||||| | |||||||| ||||        |||||||| || ||||||||||||||| ||||||||||    ||||| || |     
T  20524557 caaataaaaagtgtttggtcacacacacataaagaaatattttttttaataataaagaggaaattgataaaaaaaatgattgaat----attttaaacat 20524652  T
Q  107 aatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccatggaataata 165  Q
     ||||||| || |||||||||||||| ||||||||| || |||||| ||||||| ||||    
T  20524653 catcttttgatgtgtgtgtccaaacagtattgatttagttttgtgatcatggaagaata 20524711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 3454358 - 3454259
Alignment:
Q  54 aataataaggaagaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgac 153  Q
    ||||||||  ||||||||||||||||||||||||||||    ||||| |  ||||||||| ||||| |||| | ||| |||||||||||| |||||| ||    
T  3454358 aataataaaaaagaaattgataaaaaagatgattgaat----attttaagaagaatctttatatatttgtgactaaatattattgatttgatcttgtaac 3454263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 10719904 - 10719746
Alignment:
Q  5 gaccaaagaaaaagtgtttggtcacaaatacataaaggaatannnnnnn-aataataaggaagaaattgataaaaaaga-tgattgaattaatattttga 102  Q
    ||||||| |||||||||||||||||||| |||||||| ||||        |||| ||| ||  |||||||||||||| | |||||||||    ||||| |    
T  10719904 gaccaaataaaaagtgtttggtcacaaacacataaagaaatattttttttaatagtaaagagaaaattgataaaaaaaaatgattgaat----attttaa 10719809  T
Q  103 agagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccatggaataata 165  Q
     ||  || ||||||| |||||||||||||| |||| |||||||||| ||||||||||| ||||    
T  10719808 ggaccatttttttatgtgtgtgtccaaacactattaatttggtcttatgaccatggaagaata 10719746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 37872302 - 37872340
Alignment:
Q  128 aaacattattgatttggtcttgtgaccatggaataatat 166  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  37872302 aaacattattgatttggtcttgtgaccatggaagaatat 37872340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 2467058 - 2467013
Alignment:
Q  112 ttttatatgtgtgtccaaacattattgatttggtcttgtgaccatg 157  Q
    |||||||| |||||||||| | ||||||||||||||| ||||||||    
T  2467058 ttttatatttgtgtccaaatactattgatttggtcttatgaccatg 2467013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 21239430 - 21239475
Alignment:
Q  120 gtgtgtccaaacattattgatttggtcttgtgaccatggaataata 165  Q
    ||||||||||| | |||| |||||||||||||||||||||| ||||    
T  21239430 gtgtgtccaaagactatttatttggtcttgtgaccatggaagaata 21239475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 35476 - 35365
Alignment:
Q  54 aataataaggaagaaattgataaaaaa-gatgattgaattaatattttgaagagaatctttttat--atgtgtgtccaaacattattgatttggtcttgt 150  Q
    ||||||||| ||||||||||||||||| |||||||||||    ||||||| ||||||||||||||  |||| ||| |||| |||||||||||||||||||    
T  35476 aataataagaaagaaattgataaaaaaagatgattgaat----attttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgt 35381  T
Q  151 gaccatggaataatat 166  Q
    |||||||||| |||||    
T  35380 gaccatggaagaatat 35365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 167
Target Start/End: Original strand, 46550655 - 46550815
Alignment:
Q  5 gaccaaagaaaaagtgtttggtcacaaatacataaaggaatannnnnnn--aataataaggaagaaattgataaaaaagatgattgaattaatattttga 102  Q
    |||||||||||||||||||||||||| | |||||||| | ||         |||||||| ||  ||||||||||||| |||||||||||    |||| ||    
T  46550655 gaccaaagaaaaagtgtttggtcacacacacataaagaagtatttttttttaataataaagagaaaattgataaaaatgatgattgaat----atttaga 46550750  T
Q  103 agagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccatggaataatatt 167  Q
     |||||||||||||| | |||||  ||||||||||||||||||||||||||||||||| ||||||    
T  46550751 ggagaatctttttatgtatgtgtttaaacattattgatttggtcttgtgaccatggaagaatatt 46550815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 47541763 - 47541919
Alignment:
Q  8 caaagaaaaagtgtttggtcacaaatacataaaggaatannnnnnnaataataaggaagaaattgataaaaaagatgattgaattaatattttgaagaga 107  Q
    ||||||||||||||||||||||| | |||||||  ||||       ||||||||| | |||||||||||||||||||||||    |||||||||| || |    
T  47541763 caaagaaaaagtgtttggtcacacacacataaaaaaatatttttttaataataagaaggaaattgataaaaaagatgattg----aatattttgaggaaa 47541858  T
Q  108 atcttttta--tatgtgtgtccaaacattattgatttggtcttgtgaccatggaataatat 166  Q
    |||||||||  | |||||||||||| |||||||||||| |||||||| |||| || |||||    
T  47541859 atctttttatgtgtgtgtgtccaaatattattgatttgatcttgtgatcatgaaagaatat 47541919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 41464802 - 41464903
Alignment:
Q  54 aataataaggaagaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtg--tgtccaaacattattgatttggtcttgtg 151  Q
    |||||||| ||||||||||||||||||||||||||    | ||||||||||||||||||||||| ||||  |||  ||  |||||||||||| |||||||    
T  41464802 aataataaagaagaaattgataaaaaagatgattg----agtattttgaagagaatctttttatgtgtgtatgtttaagtattattgatttgatcttgtg 41464897  T
Q  152 accatg 157  Q
    ||||||    
T  41464898 accatg 41464903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 36364917 - 36364972
Alignment:
Q  111 tttttatatgtgtgtccaaacattattgatttggtcttgtgaccatggaataatat 166  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  36364917 tttttatatgtgtgtccaaacattattgatttggtcttgcgaccatgcaacaatat 36364972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 17056762 - 17056615
Alignment:
Q  14 aaaagtgtttggtcacaaatacataaaggaatannnnnnnaataataaggaagaaattgataaaaaagatgattgaattaatattttgaagagaatcttt 113  Q
    ||||||||||||||| | | |||||||| ||||       |||||||| || ||||||||||||||| |||||| |||    ||||| | || ||| |||    
T  17056762 aaaagtgtttggtcatacacacataaagaaatatttttttaataataaagaggaaattgataaaaaa-atgattaaat----attttaaggacaat-ttt 17056669  T
Q  114 ttatatgtgtgtc--caaacattattgatttggtcttgtgaccatggaataata 165  Q
    ||||||||||||   |||||| ||||||||||||||||||||||||||| ||||    
T  17056668 ttatatgtgtgtattcaaacactattgatttggtcttgtgaccatggaagaata 17056615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 15827160 - 15827229
Alignment:
Q  93 aatattttgaagagaatctttttatatgtgtgtc--caaacattattgatttggtcttgtgaccatggaa 160  Q
    ||||||||||  ||||||||||||| |||||||   |||| |||||||||| ||||||||||||||||||    
T  15827160 aatattttgacaagaatctttttatgtgtgtgtattcaaatattattgattcggtcttgtgaccatggaa 15827229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 52920160 - 52920197
Alignment:
Q  128 aaacattattgatttggtcttgtgaccatggaataata 165  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  52920160 aaacattattgatttggtcttgtgaccatggaagaata 52920197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 46381588 - 46381634
Alignment:
Q  110 ctttttatatgtgtgtccaaacattattgatttggtcttgtgaccat 156  Q
    |||||| |||||||||| ||| |||||| ||||||||||||||||||    
T  46381588 ctttttttatgtgtgtctaaatattatttatttggtcttgtgaccat 46381634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 7080250 - 7080153
Alignment:
Q  66 gaaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtgtgt--ccaaacattattgatttggtcttgtgaccatggaataa 163  Q
    |||||||||||||||||| |||||||    |||||||||||||||||||||| |||||||  ||||||||||||||||||||| ||||||||| ||| ||    
T  7080250 gaaattgataaaaaagattattgaat----attttgaagagaatctttttatgtgtgtgtgtccaaacattattgatttggtcatgtgaccatagaagaa 7080155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 25336928 - 25337023
Alignment:
Q  67 aaattgataaaaaagatgattgaattaatattttgaagagaatctttttatatgtg--tgtccaaacattattgatttggtcttgtgaccatggaataat 164  Q
    |||||||||||||||||||||||||    ||||| |||||||| ||||||| ||||  ||||||||||||||||||||| ||||||||||| |||| |||    
T  25336928 aaattgataaaaaagatgattgaat----attttaaagagaat-tttttatgtgtgcgtgtccaaacattattgatttgatcttgtgaccaaggaagaat 25337022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 165
Target Start/End: Original strand, 2141240 - 2141348
Alignment:
Q  54 aataataaggaagaaattgataaaaa-agatgattgaattaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtga 152  Q
    |||||||| || |||||||||||||| ||||||||||||    |||||||  | ||||||||||| || |||||||||| |||||||| || ||||||||    
T  2141240 aataataatgaggaaattgataaaaatagatgattgaat----attttgagaaaaatctttttatgtgggtgtccaaacgttattgatatgatcttgtga 2141335  T
Q  153 ccatggaataata 165  Q
    |||||||| ||||    
T  2141336 ccatggaagaata 2141348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 165
Target Start/End: Original strand, 57 - 165
Alignment:
Q  54 aataataaggaagaaattgataaaaaagatgattgaattaatattttgaagagaatctttttat--atgtgtgtccaaacattattgatttggtcttgtg 151  Q
    |||||||| || ||||||||||||||| ||||||||||    ||||| ||||  ||||||||||  ||||||||||||||| ||||||||||||||||||    
T  57 aataataaagatgaaattgataaaaaa-atgattgaat----atttttaagactatctttttatgtatgtgtgtccaaacactattgatttggtcttgtg 151  T
Q  152 accatggaataata 165  Q
    | ||||||| ||||    
T  152 atcatggaagaata 165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 18091 - 18163
Alignment:
Q  93 aatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccatggaataata 165  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||||||| | |||||| ||||||||| ||||    
T  18091 aatattttgaggagaatctttttctatgtgtgttcaaacattattgattggatcttgtaaccatggaagaata 18163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 25760 - 25688
Alignment:
Q  93 aatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccatggaataata 165  Q
    |||||||||| || ||||||||||  ||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  25760 aatattttgatgaaaatctttttacgtgtgtgtccaaacattattgatttggtctcgtgatcatggaagaata 25688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0830 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 5379 - 5462
Alignment:
Q  54 aataataaggaagaaattgataaaaaagatgattgaattaatattttgaagagaatctttttat--atgtgtgtccaaacattattgat 140  Q
    |||||||| || ||||||||||||||| ||||||||||    ||||| ||||  ||||||||||  ||||||||||||||| |||||||    
T  5379 aataataaagatgaaattgataaaaaa-atgattgaat----atttttaagactatctttttatgtatgtgtgtccaaacactattgat 5462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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