View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2357_high_41 (Length: 217)
Name: NF2357_high_41
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 26157231 - 26157434
Alignment:
| Q |
11 |
gaaacacttattcagatcacttcaagcaacaaagtttttccagacgacagaacttgattggtttgaagcaggtcttcaagtctgtcggcaggggtacaat |
110 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26157231 |
gaaacacttattcagatcacttgaagcaacaaagtttttccagacgacagaactttattgttttgaagcaggtcttcaagtctgtcggcaggggtacaat |
26157330 |
T |
|
| Q |
111 |
atgttgaatctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatttaatgcctgtcaaaaccttgactataaaagagcata |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26157331 |
atgttgaatctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatttaaagcctgtcaaaaccttgactataaaagagcata |
26157430 |
T |
|
| Q |
211 |
agaa |
214 |
Q |
| |
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|||| |
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|
| T |
26157431 |
agaa |
26157434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 26170529 - 26170732
Alignment:
| Q |
11 |
gaaacacttattcagatcacttcaagcaacaaagtttttccagacgacagaacttgattggtttgaagcaggtcttcaagtctgtcggcaggggtacaat |
110 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26170529 |
gaaacacttattcagatcacttgaagcaacaaagtttttccagacgacagaactttattgttttgaagcaggtcttcaagtctgtcggcaggggtacaat |
26170628 |
T |
|
| Q |
111 |
atgttgaatctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatttaatgcctgtcaaaaccttgactataaaagagcata |
210 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26170629 |
atgttgaatctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatttaaagcctgtcaaaaccttgactataaaagagcata |
26170728 |
T |
|
| Q |
211 |
agaa |
214 |
Q |
| |
|
|||| |
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|
| T |
26170729 |
agaa |
26170732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 44784242 - 44784039
Alignment:
| Q |
11 |
gaaacacttattcagatcacttcaagcaacaaagtttttccagacgacagaacttgattggtttgaagcaggtcttcaagtctgtcggcaggggtacaat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
44784242 |
gaaacacttattcagatcacttcaagcaacaaagtttttccagaccacagaacttgattgggttgaagcaggtcttcaagtctgtcgacaggggtacaat |
44784143 |
T |
|
| Q |
111 |
atgttgaatctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatttaatgcctgtcaaaaccttgactataaaagagcata |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |
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| T |
44784142 |
atgttgaatctgttaattcacaggaaaaatttgaactatcttcaccttgattataatttcaatttaaagcctgtcaaaaccttgactacaaaagagcgta |
44784043 |
T |
|
| Q |
211 |
agaa |
214 |
Q |
| |
|
|||| |
|
|
| T |
44784042 |
agaa |
44784039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 2896365 - 2896563
Alignment:
| Q |
16 |
acttattcagatcacttcaagcaacaaagtttttccagacgacagaacttgattggtttgaagcaggtcttcaagtctgtcggcaggggtacaatatgtt |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||| |
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| T |
2896365 |
acttattcagatcacttcaagcgacaaagtttttccagaccacagaacttgattgggttgaagcaggtcttcaagtttgtaagcaggggtacaacatgtt |
2896464 |
T |
|
| Q |
116 |
gaatctgttaattcaccggaaaaatttgaactaccttcaccttgattataatttcaatttaatgcctgtcaaaaccttgactataaaagagcataagaa |
214 |
Q |
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||||||||| || ||| ||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||||| |||||| |
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| T |
2896465 |
gaatctgttgatacacaggaaaaatttgaactaccttcaccttgattataattttaatttgaagcctgtcaaaaccttgactacaaaagagcgtaagaa |
2896563 |
T |
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