View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2357_high_42 (Length: 216)
Name: NF2357_high_42
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_high_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 47101892 - 47102090
Alignment:
| Q |
1 |
aagtgggtgacgaatctctgaaacccaagaaccccaatgtcgttgcctgacacctctgaacttctttgattgaaccatgattgcaaagtgggttgttgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47101892 |
aagtgggtgacgaatctctgaaacccaagaaccccaatgtcgttgcctgacacctctgaacttctttgattgaaccatgattgcaaagtgggttgttgtg |
47101991 |
T |
|
| Q |
101 |
cactgcaaagagatatggaaggacaaagttcagagggaacagaatagttagatataaagggacggaggcaagtgactgattaagtgtacgtacactgtc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47101992 |
cactgcaaagagatatggaaggacaaagttcagagggaacagaatagttagatataaagggatggaggcaagtgactgattaagtgtacgtacactgtc |
47102090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 2429372 - 2429435
Alignment:
| Q |
8 |
tgacgaatctctgaaacccaagaaccccaatgtcgttgcctgacacctctgaacttctttgatt |
71 |
Q |
| |
|
||||||||||| || |||||||| |||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
2429372 |
tgacgaatctccgagacccaagagccccaatggcgttgcctaacacctctgaatttctttgatt |
2429435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 44649210 - 44649281
Alignment:
| Q |
8 |
tgacgaatctctgaaacccaagaaccccaatgtcgttgcctgacacctctgaacttctttgattgaaccatg |
79 |
Q |
| |
|
||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
44649210 |
tgacgaatctcagagacccaagagccccaatggcgttgcctgacacctctgaacttctttgaatgtaccatg |
44649281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 49532400 - 49532337
Alignment:
| Q |
5 |
gggtgacgaatctctgaaacccaagaaccccaatgtcgttgcctgacacctctgaacttctttg |
68 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||||| || || |||||||| |||||||||||||||| |
|
|
| T |
49532400 |
gggtggcgaatttctgacacccaagagccccactggcgctgcctgactcctctgaacttctttg |
49532337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University