View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2357_low_16 (Length: 336)
Name: NF2357_low_16
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_low_16 |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 141 - 315
Target Start/End: Original strand, 51093879 - 51094053
Alignment:
| Q |
141 |
actttggaaaaaagagaggggatgtcaaccattcatgagaaaagttacagtagtcattaggatacaccaaatattatcacatttttcaaaattaaataat |
240 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51093879 |
actttgaaaaaaagagaggggatgtcaaccattcatgaggaaagttacggtagtcattaggatacaccaaatattatcacatttttcaaaattaaataat |
51093978 |
T |
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| Q |
241 |
tggaattgatatgccaatttgttgtgtaaataaaaaatcttcatagatatgccatgcgttccctttgattgaaga |
315 |
Q |
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| T |
51093979 |
tggaattgatatgccaatatgttgtgtaaataaaaaatattcatagatatgccatgtgttccctttgattgaaga |
51094053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 51093778 - 51093882
Alignment:
| Q |
17 |
atgcatcatacaagtaataagcatatccagaaaattgggagagtgaaagaggaacatcatatgctcaacttctaagttaatgtcatggtacagtaaaatt |
116 |
Q |
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| T |
51093778 |
atgcatcatacaagtaataagcatatccagaaaatagggagagtgaaagaggaacatcatatgcttaacttctaagttaatgtcaaggtgcagtaaaatt |
51093877 |
T |
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| Q |
117 |
gactt |
121 |
Q |
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||||| |
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| T |
51093878 |
gactt |
51093882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 27366287 - 27366531
Alignment:
| Q |
16 |
tatgcatcatacaagtaataa-gcatatccagaaaattgggagagtgaaagaggaacatcatatgctcaacttctaagttaatgtcatggtacagtaaaa |
114 |
Q |
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| T |
27366287 |
tatgcatcatacaagtaataaagcatatccaggaaattgggagagtgaaagaggaatatcataagcttaacttcgaagttaatgtcaaggtgtaacaaaa |
27366386 |
T |
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| Q |
115 |
ttgacttctgtacgattagcagttttactt--tggaaaaaagagaggggatgtcaaccattcatgagaaaagttacagtagtcattaggatacaccaaat |
212 |
Q |
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| T |
27366387 |
ttggtttctctatgattagcatttttacttagagaaaaaaagacaggggatgtcaaccattcatgaggaaagtaatggtagacattacgcaaaaccaaat |
27366486 |
T |
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| Q |
213 |
attatcacatttttcaaaattaaataattggaattgatatgccaa |
257 |
Q |
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| T |
27366487 |
tttatcacattttacaaagtaaaataatagggattgttatgccaa |
27366531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 27456634 - 27456878
Alignment:
| Q |
16 |
tatgcatcatacaagtaataa-gcatatccagaaaattgggagagtgaaagaggaacatcatatgctcaacttctaagttaatgtcatggtacagtaaaa |
114 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| ||| |||||| |||||||||||| ||| | |||| |
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| T |
27456634 |
tatgcatcatacaagtaataaagcatatccaggaaattgggagagtgaaagaggaatatcataagcttaacttcgaagttaatgtcaaggtgtaacaaaa |
27456733 |
T |
|
| Q |
115 |
ttgacttctgtacgattagcagttttactt--tggaaaaaagagaggggatgtcaaccattcatgagaaaagttacagtagtcattaggatacaccaaat |
212 |
Q |
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| T |
27456734 |
ttggtttctctatgattagcatttttacttagagaaaaaaagacaggggatgtcaaccattcatgaggaaagtaatggtagacattacgcaaaaccaaat |
27456833 |
T |
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| Q |
213 |
attatcacatttttcaaaattaaataattggaattgatatgccaa |
257 |
Q |
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| T |
27456834 |
tttatcacattttacaaagtaaaataatagggattgttatgccaa |
27456878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 45074739 - 45074654
Alignment:
| Q |
16 |
tatgcatcatacaagtaataagcatatccagaaaattgggagagtgaaagaggaacatcatatgctcaacttctaagttaatgtca |
101 |
Q |
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| T |
45074739 |
tatgcatcatacaagtaataagcatatccaggaaattgggagagtgaaagaggaataacataagcttaacttcgaagttgatgtca |
45074654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 27762 - 27823
Alignment:
| Q |
16 |
tatgcatcatacaagtaataagcatatccagaaaattgggagagtgaaagaggaacatcata |
77 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27762 |
tatgcatcatacaagtaataagcatatccaataaattgggagagtgaaagaggaacatcata |
27823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 260
Target Start/End: Complemental strand, 23121313 - 23121201
Alignment:
| Q |
148 |
aaaaaagagaggggatgtcaaccattcatgagaaaagttacagtagtcattaggatacaccaaatattatcacatttttcaaaattaaataattggaatt |
247 |
Q |
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|||||||||||||||||| |||||||| |||| ||| | | |||||||||||| | ||||||| ||||||||||||| ||| | |||||||||| ||| |
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| T |
23121313 |
aaaaaagagaggggatgttaaccattcgtgaggaaaataattgtagtcattaggcaaaaccaaattttatcacatttttgaaagtaaaataattgggatt |
23121214 |
T |
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| Q |
248 |
gatatgccaattt |
260 |
Q |
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| T |
23121213 |
gttatgctaattt |
23121201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 201
Target Start/End: Original strand, 22631101 - 22631265
Alignment:
| Q |
41 |
atccagaaaattgggagagtgaaagaggaacatcatat--gctcaacttctaagttaatgtcatggtacagtaaaattgacttctgtacgattagcagtt |
138 |
Q |
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|||||| ||||||||||||||||||||||| | || || ||| ||||||||||||||||||| || | | || || |||| || ||||||| || |
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| T |
22631101 |
atccaggaaattgggagagtgaaagaggaatagcacatttgcttaacttctaagttaatgtcagagtgtaaaataactggtttctctatgattagcgctt |
22631200 |
T |
|
| Q |
139 |
ttactttgg--aaaaaagagaggggatgtcaaccattcatgagaaaagttacagtagtcattagg |
201 |
Q |
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|| || ||| |||||||||||||||||||||||||||||||| ||| | | |||||||||||| |
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| T |
22631201 |
tttctatgggaaaaaaagagaggggatgtcaaccattcatgaggaaaataattgtagtcattagg |
22631265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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