View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2357_low_17 (Length: 330)
Name: NF2357_low_17
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 37429852 - 37430037
Alignment:
| Q |
19 |
cacagacaaattacacggctggctaccgacacaaagatatctcacgacccagtgtaatagaatagggattattctttcttgatattagtatgaatatgta |
118 |
Q |
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| T |
37429852 |
cacagacaaattacacggctggctaccgacacaaagatatctcacgacccagtgtaatagaatagggattattctttcttgatattagtatgaatatgta |
37429951 |
T |
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| Q |
119 |
taaaggtcttccactacc--nnnnnnnnntgtataaaggtcttcctacttcctagtaattgatttaagaacatcgtttattgattc |
202 |
Q |
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| T |
37429952 |
taaaggtcttccactaccaaaaaaaaaaatgtataaaggtcttcctacttcctagtaattgatttaagaacatcgtttattgattc |
37430037 |
T |
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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 37430084 - 37430150
Alignment:
| Q |
249 |
gtaagtagcaagtgtttaaagatattggttaaagnnnnnnnttgtatcgaaaaataacgaaattatt |
315 |
Q |
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| T |
37430084 |
gtaagtagcaagtgtttaaagatattggttaaagaaaaaaattgtatcgaaaaataacgaaattatt |
37430150 |
T |
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