View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2357_low_18 (Length: 318)
Name: NF2357_low_18
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 8362719 - 8362936
Alignment:
| Q |
14 |
cacttagtacataaaaggtggtcaaattttttaaattggcactcaaacttctgttcaaatatatctcagtgtgagattcattt-ctctattatcttcaga |
112 |
Q |
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| T |
8362719 |
cacttaggacataaaaggtggtcaaattttttaaattggcactcaaacttctgttcaaatatatctcagtgtgagattcattttctctattatcttcaga |
8362818 |
T |
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| Q |
113 |
atgttgtccattttccttgatgtttttgcaccgctcctatatattttgattcatagaatttgttcagatgataaaacattgcttgaacatttgataagct |
212 |
Q |
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| T |
8362819 |
atgttgtccattttccttgatgtttttgcaccgctcctatatattttgattcatagaatttgttcagatgataaaacattgcttgaacat---ataagct |
8362915 |
T |
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| Q |
213 |
tggttagggtttaaatccaca |
233 |
Q |
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| T |
8362916 |
tggttagggtttaaatccaca |
8362936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 8370637 - 8370726
Alignment:
| Q |
50 |
tggcactcaaacttctgttcaaatatatctcagtgtgagattca-tttctctattatcttcagaatgttgtccattttccttgatgtttt |
138 |
Q |
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| T |
8370637 |
tggcacttaagcttttgttcaaatatatctcagtttgaggtccattttctccaaaatcttcagaatgttggtccttttccttgatatttt |
8370726 |
T |
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