View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2357_low_2 (Length: 801)
Name: NF2357_low_2
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 775; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 775; E-Value: 0
Query Start/End: Original strand, 18 - 796
Target Start/End: Complemental strand, 45596054 - 45595276
Alignment:
| Q |
18 |
gagatcatatggtccttatatcacattacacttgcgctatgagaaggatatgcttgcattcagcggctgcacgcatgatttatcaacttctgaggccaag |
117 |
Q |
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| T |
45596054 |
gagatcatatggtccttatatcacattacacttgcgctatgagaaggatatgcttgcattcagcggctgcacgcatgatttatcaacttctgaggccaag |
45595955 |
T |
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| Q |
118 |
gaactacggattatcaggtaatgatgcttcaaaattctgtcaaattttcagtttaatttttcttcctgatgtttgaaatgactaacatgaaccaaactta |
217 |
Q |
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| T |
45595954 |
gaactacggattatcaggtaatgatgcttcaaaattctgtcaaattttcagtttaatttttcttcctgatgtttgaaatgactaacatgaaccaaactta |
45595855 |
T |
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| Q |
218 |
cagagagaatactacttattggaaaagaaagcacatcaatccaaaagaagagagggccaaagggtattgtcccttaactccaaaggaagttggaattttc |
317 |
Q |
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| T |
45595854 |
cagagagaatactacttattggaaaagaaagcacatcgatccaaaagaagagagggccaaagggtattgtcccttaactccaaaggaagttggaattttc |
45595755 |
T |
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| Q |
318 |
cttagtgctcttggataccctgcaaagactccaatatatattgctgcaggggagatatatgggggtgaatcccatatgactgaattgcgatcacgctatc |
417 |
Q |
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| T |
45595754 |
cttagtgctcttggataccctgcaaagactccaatatatattgctgcaggggagatatatgggggtgaatcccatatgactgaattgcgatcacgctatc |
45595655 |
T |
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| Q |
418 |
cctttttaatgagcaaggttagaaattacaagactttattgttgtttcttggtgaatgaagattgataaagcattgtttgaactggtttcttatttaatc |
517 |
Q |
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| T |
45595654 |
cctttttaatgagcaaggttagaaattacaagactttattgttgtttcttggtgaatgaagattgataaagcattgtttgaactggtttcttatttaatc |
45595555 |
T |
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| Q |
518 |
tacatgtaactaatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgtatct |
617 |
Q |
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| T |
45595554 |
tacatgtaactaatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgtatct |
45595455 |
T |
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| Q |
618 |
gttgaaagtgatgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttcttgggagaggaagaaccatttctccag |
717 |
Q |
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| T |
45595454 |
gttgaaagtgatgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttcttgggagaggaagaaccatttctccag |
45595355 |
T |
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| Q |
718 |
ataggtgagcctctctttctctcctaagcagatgaattaattttgtaattcattatccctaatgtttgcctttgcttct |
796 |
Q |
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| T |
45595354 |
ataggtgagcctctctttctctcctaagcagatgaattaattttgtaattcattatccctaatgtttgcctttgcttct |
45595276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 263 - 436
Target Start/End: Complemental strand, 27151508 - 27151335
Alignment:
| Q |
263 |
agaagagagggccaaagggtattgtcccttaactccaaaggaagttggaattttccttagtgctcttggataccctgcaaagactccaatatatattgct |
362 |
Q |
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| T |
27151508 |
agaacagaggtccaaagggttttgccccttaacaccaaaggaagttggaatttttcttactgctcttggatatccatcaaagacgccgatatatattgct |
27151409 |
T |
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| Q |
363 |
gcaggggagatatatgggggtgaatcccatatgactgaattgcgatcacgctatccctttttaatgagcaaggt |
436 |
Q |
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| T |
27151408 |
gctggagagatttatgggggtgagtcccatatggctgaactgcgatcccgttatccattgttaatgagcaaggt |
27151335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 528 - 694
Target Start/End: Complemental strand, 27149117 - 27148951
Alignment:
| Q |
528 |
taatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtg |
627 |
Q |
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| T |
27149117 |
taatttcaggaaacgttggcatccattgaggagcttgaacccttttttaatcatgcttctcaaatggctgctcttgactatattgtatctatcgagagtg |
27149018 |
T |
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| Q |
628 |
atgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttcttgg |
694 |
Q |
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| T |
27149017 |
atgtatttataccctcttattctggaaacatggcaagggctgttgaaggtcatcgccgttttcttgg |
27148951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 27151723 - 27151677
Alignment:
| Q |
55 |
tatgagaaggatatgcttgcattcagcggctgcacgcatgatttatc |
101 |
Q |
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| T |
27151723 |
tatgagaaggatatgcttgcatttagtgggtgtacgcatgatttatc |
27151677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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