View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2357_low_30 (Length: 250)
Name: NF2357_low_30
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30731059 - 30731298
Alignment:
| Q |
1 |
atattatactacatgttacaatgaatattaattaataatgcagctcatcaagaagcattgaagagggagatagagaggctgaggcaagtgtatcaccaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30731059 |
atattatactacatgttacaatgaatattaattaataatgcagctcatcaagaagcattgaagagggagatagagaggctgaggcaagtgtatcaccaac |
30731158 |
T |
|
| Q |
101 |
aacaaaacatcaagaacaatgctacagcagcagcagtgtcaccatctccatcacctaaaccacgatgtgataatgatactcacattgaaaatgaacatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30731159 |
aacaaaacatcaagaacaatgctacagcagcagcagtgtcaccatctccatcacctaaaccacgatgtgataatgatactcacattgaaaatgaacatct |
30731258 |
T |
|
| Q |
201 |
tatcaatgtttgagacatggctagttcacatgatcctatg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30731259 |
tatcaatgtttgagacatggctagttcacatgatcctatg |
30731298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 32639413 - 32639352
Alignment:
| Q |
41 |
cagctcatcaagaagcattgaagagggagatagagaggctgaggcaagtgtatcaccaacaa |
102 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||||| ||| |||||||| | |||||||||||| |
|
|
| T |
32639413 |
cagctcatcaagaagcattaaagaaggaaatagaaaggttgaggcaaatctatcaccaacaa |
32639352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University