View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2357_low_34 (Length: 247)
Name: NF2357_low_34
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_low_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 44136327 - 44136568
Alignment:
| Q |
1 |
atctccggaagataaacgaggtggcccttctcgtactgcctggctcattag--gattccaacaggtggtcaccgactgtaatttatatgatctacctctt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44136327 |
atctccggaagataaacgaggtggcccttctcgtactgcctggctcattagaggattccaacaggtggtcaccgactgtaatttatatgatctacctctt |
44136426 |
T |
|
| Q |
99 |
cttggctaccaattcacttggttcgaaagtatcggcaccgcttcttcgaaggaagcccgtttagatggtgctcttgttacttcctcctggcatgatctct |
198 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44136427 |
cttggctaccaattcacttggttcaaaagtatcggcaccgcttcttcgaaggaagcccgtttagatcgtgctcttgttacttcctcctggcatgatctct |
44136526 |
T |
|
| Q |
199 |
acctgaatgcaactctgcaaactcttatggctccaatctctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44136527 |
acctgaatgcaactctgcaaactcttatggctccaatctctg |
44136568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 190
Target Start/End: Complemental strand, 12462297 - 12462179
Alignment:
| Q |
72 |
gactgtaatttatatgatctacctcttcttggctaccaattcacttggttcgaaagtatcggcaccgcttcttcgaaggaagcccgtttagatggtgctc |
171 |
Q |
| |
|
|||||||||||| |||| ||||| | |||| |||||||||||||||||| ||||||| || |||| || ||||| ||||||||| | ||| | || | |
|
|
| T |
12462297 |
gactgtaatttacttgatatacctttgattggttaccaattcacttggttcaaaagtattggaaccgaatcctcgaaagaagcccgtcttgatagagccc |
12462198 |
T |
|
| Q |
172 |
ttgttacttcctcctggca |
190 |
Q |
| |
|
|||| || ||||||||||| |
|
|
| T |
12462197 |
ttgtcacgtcctcctggca |
12462179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 16859835 - 16859925
Alignment:
| Q |
100 |
ttggctaccaattcacttggttcgaaagtatcggcaccgcttcttcgaaggaagcccgtttagatggtgctcttgttacttcctcctggca |
190 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| || |||| || ||||| ||||||||| | ||| | || ||||| || ||||||||||| |
|
|
| T |
16859835 |
ttggttaccaattcacttggttcaaaagtattggaaccgaatcctcgaaagaagcccgtcttgatagagcccttgtcacgtcctcctggca |
16859925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University