View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2357_low_35 (Length: 243)
Name: NF2357_low_35
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_low_35 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 25716928 - 25717149
Alignment:
| Q |
4 |
acactgacatatgttggacacctgacacaccttcgatcagaagtgtcaatgctacttggaattgggttgagcggtgaattactcttaccgtgactttaga |
103 |
Q |
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| T |
25716928 |
acactgacatatgttggacatctgacacaccttcaatcagaagtgtcaatactactgggaattaggttgagcggtgaattactcttaccgtgactttgga |
25717027 |
T |
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| Q |
104 |
gctctccaatgatgaattttaaaagctcaaatgtgtagctcctgacccaccatgattttggtgttttcc-aaacacacaccaagtatgattgtcttattg |
202 |
Q |
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| T |
25717028 |
gctccccaatggtgaattttagaagctcaaatgtgtagcttctgacccacc---attttggtgttttccaaaacacacaccaagtatgattgtcttattg |
25717124 |
T |
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| Q |
203 |
aggattgttgttgatgagtcaattg |
227 |
Q |
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| T |
25717125 |
aggattgttgttgatgagtcaattg |
25717149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 35665589 - 35665545
Alignment:
| Q |
6 |
actgacatatgttggacacctgacacaccttcgatcagaagtgtc |
50 |
Q |
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| T |
35665589 |
actgacatgtgttggacactggacacaccttctatcagaagtgtc |
35665545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 11203068 - 11203103
Alignment:
| Q |
15 |
tgttggacacctgacacaccttcgatcagaagtgtc |
50 |
Q |
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| T |
11203068 |
tgttggacaccggacacaccttcgatcagaagtgtc |
11203103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 27219851 - 27219891
Alignment:
| Q |
9 |
gacatatgttggacacctgacacaccttcgatcagaagtgt |
49 |
Q |
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| T |
27219851 |
gacacatgttagacaccagacacaccttcgatcagaagtgt |
27219891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 50720 - 50764
Alignment:
| Q |
16 |
gttggacacctgacacaccttcgatcagaagtgtcaatgctactt |
60 |
Q |
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| T |
50720 |
gttggacaccggacacacctttgatcagaagtgtcggtgctactt |
50764 |
T |
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