View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2357_low_41 (Length: 227)
Name: NF2357_low_41
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_low_41 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 9440029 - 9439791
Alignment:
| Q |
7 |
cttctttgattctttttatcagtttgaaaaatacattaggagtaagagatagttgtagatttgtagtgcacttatctttacctcgttcattgtctttatg |
106 |
Q |
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| T |
9440029 |
cttctttgattctttttatcaatttgaaaaatacattaggagtaagagatagttgtagatttgtagtgcacttatctttacctcgttcattgtctttatg |
9439930 |
T |
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| Q |
107 |
ttatgatttat--ttannnnnnnnaaataaggtattgagttctagctagcatttgaagctcaaagagagcat----------------tgctaacccgat |
188 |
Q |
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| T |
9439929 |
ttatgattttttatttttatttttaaataaggtattgagttctagctagcatttgaagctcaaaaagagcatttcttgtacatttagctgctaaaccgat |
9439830 |
T |
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| Q |
189 |
tgattatttccaagttccattcacttaatcaagacttca |
227 |
Q |
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| T |
9439829 |
tgattatttccaagttccatttacttaatcaagacttca |
9439791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 9356689 - 9356633
Alignment:
| Q |
29 |
tttgaaaaatacattaggagtaagagatagttgtagatttgtagtgcacttatcttt |
85 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9356689 |
tttgcaaaatacattaggagtaagagatagttgtagacctgtagtgcacttatcttt |
9356633 |
T |
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