View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2357_low_42 (Length: 225)
Name: NF2357_low_42
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 6050484 - 6050668
Alignment:
| Q |
25 |
ccttacatttattctctagaaataaattatgaaaacgtcactaaagggatgtgagaagccaattacttccttgagctgcaccaaataattctatgtaatg |
124 |
Q |
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| T |
6050484 |
ccttacatttattctctagaaataaattatgaaaacgtcactaaagggatgtgagaagccaattacttccttgagctgcaccaaataattctatgtaagg |
6050583 |
T |
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| Q |
125 |
gcaaatgaagtctgaggccgtttacaactttttcattctcccatgtagctgttatcattcacacaatcactaccatgcatttcattt |
211 |
Q |
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| T |
6050584 |
gcaaatgaagtctgaggccgtttacaac--tttcattctcccatgtagctgttatcattcacacaatcactaccatgcatttcattt |
6050668 |
T |
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Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 30518539 - 30518730
Alignment:
| Q |
19 |
gattagccttacatttattctctagaaataaattatgaaaacgtcactaaagggatgtgagaagccaattacttccttgagctgcaccaaataattctat |
118 |
Q |
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| T |
30518539 |
gattagccttacatttattctctagaaataaattatgaaaacgtcactaaagggatgtgagaagccaattacttccttgagctgcaccaaataattctat |
30518638 |
T |
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| Q |
119 |
gtaatggcaaatgaagtctgaggccgtttacaactttttcattctcccatgtagctgttatcattcacacaatcactaccatgcatttcatttc |
212 |
Q |
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| T |
30518639 |
gtaagggtaaatgaagtctgaggccgtttacaac--tttaattctcccatgtagctgttatcattcacacaatcactaccatgcatttcatttc |
30518730 |
T |
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Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 32706235 - 32706138
Alignment:
| Q |
20 |
attagccttacatttattctctagaaataaattatgaaaacgtcactaaagggatgtgagaagccaattacttccttgagctgcaccaaataattcta |
117 |
Q |
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| T |
32706235 |
attagctttagatttattctctagaaataaattatgaaaacgtcactaatggaatgtgagtagccaattactttcttgagctgcaccaaataattcta |
32706138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 32706133 - 32706075
Alignment:
| Q |
155 |
tttcattctcccatgtagctgttatcattcacacaatcactac-catgcatttcatttc |
212 |
Q |
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| T |
32706133 |
tttcattctcccatgtagctgttatcattcacacaatcactacgcatgcatttcatttc |
32706075 |
T |
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Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 23143010 - 23143104
Alignment:
| Q |
116 |
tatgtaatggcaaatgaagtctgaggccgtttacaactttttcattctcccatgtagctgttatcattcacacaatcactaccatgcatttcatttc |
212 |
Q |
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| T |
23143010 |
tatgtaatgacaaatgaagtgtgagcccgtttacaacttt--cattctcccacgtagttgttatcattcacacaatcagtaccatgcatttcatttc |
23143104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 23142748 - 23142806
Alignment:
| Q |
53 |
atgaaaacgtcactaaagggatgtgagaagccaattacttccttgagctgcaccaaataa |
112 |
Q |
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| T |
23142748 |
atgaaaacgtcactaaagg-atgtgagtagccaattatttccttgagctgcaccaaataa |
23142806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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