View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2357_low_48 (Length: 208)
Name: NF2357_low_48
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 5211725 - 5211551
Alignment:
| Q |
16 |
atcataacatatacacttttattggttaaaatttaaatatattatgttaaatttataagaaaccttcataatttagtaaaatccatttaatttcaaccga |
115 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5211725 |
atcataacatatacacttttatcggttaaaattaaaatatattatgttaaatttataagaaaccttcataatttagtaaaatccatttaatttcaaccga |
5211626 |
T |
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| Q |
116 |
cagaaacgtgtgttgnnnnnnnngatgttttacatagtgttgcttgctacacactcttctcatcatacatgctcat |
191 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5211625 |
cagaaacgtgtgttgaaaaaaaa-ttgttttacatagtgttgcttgctacacactcttctcatcatacatactcat |
5211551 |
T |
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