View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2357_low_6 (Length: 443)
Name: NF2357_low_6
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 12 - 390
Target Start/End: Complemental strand, 9808267 - 9807885
Alignment:
| Q |
12 |
atgaaataggcttatctgtcgtt-aatattgttgtataattaggtcatccatacaactttgtcgatatatttggcaactcaaatcagacctgatagtgaa |
110 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9808267 |
atgaaataggcttatctgtcatttaatattgttgtataattaggtcatccatacaactttgtcaatatctttggcaactcaaatcagacctgatagtgaa |
9808168 |
T |
|
| Q |
111 |
tcacctggtagatctgcaaaatgaacaaactgtaaactagtatgagacacactgatcacacagttt---gcaccatttttaagagttttccgcgtaatat |
207 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
9808167 |
tcacctggtagatctacaaaatgaacaaactgtaaactagtatgagacacactgatcacacagtttattgcaccattcttaagagttttccgcgtaatat |
9808068 |
T |
|
| Q |
208 |
acagtaaccctcaagatttaacaaatcccttccaggtaagaaccgatgatataaaactactggcaaggaaaaatacatccaggaagatgaaaatgaagag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9808067 |
acagtaaccctcaagatttaacaaatcccttccaggtaagaaccgatgatataaaactactggcaaggaaaaatacatccaggaagatgaaaatgaagag |
9807968 |
T |
|
| Q |
308 |
ttgtgtatcagactcatgaaaatccgttagtgtacgacttgaagcattaaaacaaattgggttttgtttatgttgtgcatgag |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9807967 |
ttgtgtatcagactcatgaaaatccgttagtgtacgacttgaagcattaaaacaaattgggttttgtttatgttgtgcatgag |
9807885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 390
Target Start/End: Complemental strand, 42899645 - 42899599
Alignment:
| Q |
343 |
gacttgaagcattaaaacaaattgggttttgtttatgttgtgcatgag |
390 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
42899645 |
gacttgaagcattaaaa-aaattgggttttgtttaggttgtgcatgag |
42899599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University