View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2357_low_8 (Length: 409)
Name: NF2357_low_8
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 186 - 399
Target Start/End: Original strand, 26153749 - 26153959
Alignment:
| Q |
186 |
atatgattaatttgaaatgttctatcatccatatgtaatgttatcaaataggagcctatagcg-tgctacaggcctacaacttagcgcaatttgaacaaa |
284 |
Q |
| |
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||||||||||||||||||||| | |||||||| |||||| |||||||||||| |||| || |||| || ||||||||||||||| |||||||||||| |
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| T |
26153749 |
atatgattaatttgaaatgtta---cctccatatgcaatgttgtcaaataggagc-tataacggtgctgcaagcctacaacttagcgtaatttgaacaaa |
26153844 |
T |
|
| Q |
285 |
tcactattgtgatgtgaaatagcagttatagcggcactataatattgtagcgtatagaagaatttgaacagattgttatttactgcaatccatacctgac |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
26153845 |
tcactattgtgatgtgaaatagcagttatagcggcactataatattgtagcgtataaaaggatttgaacagattgttatttactacaatccatacctgac |
26153944 |
T |
|
| Q |
385 |
aacattgctcctatg |
399 |
Q |
| |
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||||||| ||||||| |
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| T |
26153945 |
aacattgttcctatg |
26153959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 259 - 399
Target Start/End: Original strand, 26158773 - 26158913
Alignment:
| Q |
259 |
ctacaacttagcgcaatttgaacaaatcactattgtgatgtgaaatagcagttatagcggcactataatattgtagcgtatagaagaatttgaacagatt |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26158773 |
ctacaacttagcgcaatttgaacaaatcactattgtgatgtgaaatagcagttatagcggcactataatattgtagcgtatagaagaatttgaacagatt |
26158872 |
T |
|
| Q |
359 |
gttatttactgcaatccatacctgacaacattgctcctatg |
399 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
26158873 |
tttatttactgcaatccatacctgacaacattgctcctatg |
26158913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 186 - 399
Target Start/End: Original strand, 26167047 - 26167257
Alignment:
| Q |
186 |
atatgattaatttgaaatgttctatcatccatatgtaatgttatcaaataggagcctatagcg-tgctacaggcctacaacttagcgcaatttgaacaaa |
284 |
Q |
| |
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||||||||||||||||||||| | |||||||| |||||| |||||||||||| |||| || |||| || ||||||||||||||| |||||||||||| |
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| T |
26167047 |
atatgattaatttgaaatgtta---cctccatatgcaatgttgtcaaataggagc-tataacggtgctgcaagcctacaacttagcgtaatttgaacaaa |
26167142 |
T |
|
| Q |
285 |
tcactattgtgatgtgaaatagcagttatagcggcactataatattgtagcgtatagaagaatttgaacagattgttatttactgcaatccatacctgac |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
26167143 |
tcactattgtgatgtgaaatagcagttatagcggcactataatattgtagcgtataaaaggatttgaacagattgttatttactacaatccatacctgac |
26167242 |
T |
|
| Q |
385 |
aacattgctcctatg |
399 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
26167243 |
aacattgttcctatg |
26167257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 259 - 399
Target Start/End: Original strand, 26172071 - 26172211
Alignment:
| Q |
259 |
ctacaacttagcgcaatttgaacaaatcactattgtgatgtgaaatagcagttatagcggcactataatattgtagcgtatagaagaatttgaacagatt |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26172071 |
ctacaacttagcgcaatttgaacaaatcactattgtgatgtgaaatagcagttatagcggcactataatattgtagcgtatagaagaatttgaacagatt |
26172170 |
T |
|
| Q |
359 |
gttatttactgcaatccatacctgacaacattgctcctatg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26172171 |
tttatttactgcaatccatacctgacaacattgctcctatg |
26172211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 26157571 - 26157713
Alignment:
| Q |
19 |
tctcatgttggtcaaatgaccggtatgtatcgttacaagtataggcttatgtggcaaattaggatgtgtaaagacttgaagcccttgatttactactgtt |
118 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
26157571 |
tctcatgttggtcaactgaccggtatgtatcgttacaagtataggcttatgcggcaaattaggatgtgtaaagacttgaagcacttgatttactaccgtt |
26157670 |
T |
|
| Q |
119 |
ttaacactggtcctgtcgggaagggaccaggttgtgggttttg |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26157671 |
ttaacactggtcctgtcgggaagggaccaggttgtgggttttg |
26157713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 26170869 - 26171011
Alignment:
| Q |
19 |
tctcatgttggtcaaatgaccggtatgtatcgttacaagtataggcttatgtggcaaattaggatgtgtaaagacttgaagcccttgatttactactgtt |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
26170869 |
tctcatgttggtcaactgaccggtatgtatcgttacaagtataggcttatgcggcaaattaggatgtgtaaagacttgaagcacttgatttactaccgtt |
26170968 |
T |
|
| Q |
119 |
ttaacactggtcctgtcgggaagggaccaggttgtgggttttg |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26170969 |
ttaacactggtcctgtcgggaagggaccaggttgtgggttttg |
26171011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 44783902 - 44783760
Alignment:
| Q |
19 |
tctcatgttggtcaaatgaccggtatgtatcgttacaagtataggcttatgtggcaaattaggatgtgtaaagacttgaagcccttgatttactactgtt |
118 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| ||| |
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| T |
44783902 |
tctcatgttggtcaattgaccggtatgtatcgttacaaatataggcttatgcggcaaattaggatgtgtaaagatttgaagcacttgatttactaccgtt |
44783803 |
T |
|
| Q |
119 |
ttaacactggtcctgtcgggaagggaccaggttgtgggttttg |
161 |
Q |
| |
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| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44783802 |
tcaacactggtcctgtcgggaagggaccaggctgtgggttttg |
44783760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 2896700 - 2896842
Alignment:
| Q |
19 |
tctcatgttggtcaaatgaccggtatgtatcgttacaagtataggcttatgtggcaaattaggatgtgtaaagacttgaagcccttgatttactactgtt |
118 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||| || | ||||| || ||||| ||||||||||| | ||||||||||||| ||| |
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| T |
2896700 |
tctcatgttggtcaattgaccggtatgtatcgatacaagtataggcttttgcgacaaataagaatgtgcaaagacttgaaacacttgatttactaccgtt |
2896799 |
T |
|
| Q |
119 |
ttaacactggtcctgtcgggaagggaccaggttgtgggttttg |
161 |
Q |
| |
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|||||||||| ||||||||||||||||| |||||||||||||| |
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|
| T |
2896800 |
ttaacactggccctgtcgggaagggacccggttgtgggttttg |
2896842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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