View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2357_low_9 (Length: 388)
Name: NF2357_low_9
Description: NF2357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2357_low_9 |
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| [»] scaffold0590 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 380
Target Start/End: Complemental strand, 10479404 - 10479045
Alignment:
| Q |
20 |
ctgtcatcaccatttcctctttcctttaggtcacctcatattccctctaaagtcactgttgctctcacgctctctcttaacaccacaacattgtgttcat |
119 |
Q |
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| T |
10479404 |
ctgtcgtcaccatttcctctttcctttaggtcacctcttattccctctaaagtcactgttgctctcacgctctctcttaacaccacaacattgtgttcat |
10479305 |
T |
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| Q |
120 |
ttgtatgcttttcctttctatctcacttttcaattttaatgctttacgctaagctatctccaaattcattggatgagaactaaatagcactatgtacatg |
219 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10479304 |
ttgtttgcttttcctttctatctcacttttcaattttaatgctttacgctaagctatctccaaattcattggatgagaactaaatagcactatgtacatg |
10479205 |
T |
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| Q |
220 |
aggccagtagcacttattagaacaagtttatggtattacacttgtctcaaaaacactctaataaccatcacaattcacaagggtccttatcgcttcaggt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10479204 |
aggccagtagcacttattagaacaagtttatggtattacacttgtctcaaaaacactctaataaccatcacaattcacaagggtccttatc-cttcaggt |
10479106 |
T |
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| Q |
320 |
ttactcaacaaagtatttctgttcacaacatattaggagctgccaaatctgttttcttctc |
380 |
Q |
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| T |
10479105 |
ttactcaacaaagtatttctgttcacaacatattaggagctgccaaatctgttttcttctc |
10479045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 124 - 380
Target Start/End: Original strand, 4954130 - 4954378
Alignment:
| Q |
124 |
atgcttttcctttctatctca---cttttcaattttaatgctttacgctaagctatctccaaattcattggatgagaactaaatagcactatgtacatga |
220 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| | ||| |
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| T |
4954130 |
atgcttttcctttctatctcatcacttttgaattttaatgctttacgttaagctatctctaaattcattggatgagaactgaatagcactatgtgcctga |
4954229 |
T |
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| Q |
221 |
ggccagtagcacttattagaacaagtttatggtattacacttgtctcaaaaacactctaataaccatcacaattcacaagggtccttatcgcttcaggtt |
320 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||| | |||| |
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| T |
4954230 |
ggccagtaacacttattagaacaagtttatggtattacacttgtctcaaacacaccgtaataaccatcacaattcataagggtcttcatcg--------- |
4954320 |
T |
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| Q |
321 |
tactcaacaaagtatttctgttcacaacatattaggagctgccaaatctgttttcttctc |
380 |
Q |
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| T |
4954321 |
--ctcaacaaagtgattatgttcacaacatattaggagctgccaaatttgttttcttctc |
4954378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0590 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: scaffold0590
Description:
Target: scaffold0590; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 219 - 380
Target Start/End: Complemental strand, 4859 - 4709
Alignment:
| Q |
219 |
gaggccagtagcacttattagaacaagtttatggtattacacttgtctcaaaaacactctaataaccatcacaattcacaagggtccttatcgcttcagg |
318 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||| | |||| |
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| T |
4859 |
gaggccagtaaaacttattagaacaagtttatggtattacacttgtctcaaacacacagtaataaccatcacaattcataagggtcttcatcg------- |
4767 |
T |
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| Q |
319 |
tttactcaacaaagtatttctgttcacaacatattaggagctgccaaatctgttttcttctc |
380 |
Q |
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| T |
4766 |
----ctcaacaaagtgattatgttcacaacatattaggagctgccaaatttgttttcttctc |
4709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0590; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 7897 - 7798
Alignment:
| Q |
124 |
atgcttttcctttctatctcacttttcaattttaatgctttacgctaagctatctccaaattcattggatgagaactaaatagcactatgtacatgaggc |
223 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| || ||||| |
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| T |
7897 |
atgcttttcctttctatctcacttttgaattctaatgctttacgttaagctatctctaaattcattggatgagaactgaatagcactatgtgcacgaggc |
7798 |
T |
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