View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2358_high_2 (Length: 300)
Name: NF2358_high_2
Description: NF2358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2358_high_2 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 30698981 - 30698682
Alignment:
| Q |
1 |
ctaaacagaaacctctttcttcctaatgcatatgatgactagctcttacttcaataacccagatttggaaatgttgcaacaagatcctactaatattctc |
100 |
Q |
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| T |
30698981 |
ctaaacagaaaccactttcttcctaatgcatatgatgagtagctcttacttcaataacccagatttggaaatgttgcaacaagatcctactaatattctc |
30698882 |
T |
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| Q |
101 |
tttgaaccatttcatcatgaccctaatattcatgattatctttcctttgacatggttgaccaacaaggaccaacaaaaaatgaaccaaatcatgaactag |
200 |
Q |
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| T |
30698881 |
tttgaaccatttcatcatgaccctaatattcatgattatctttcctttgacatggttgaccaacaaggaccaacaaaaaatgaaccaaatcatgaactag |
30698782 |
T |
|
| Q |
201 |
tgaagaactttcaaactagagaagaaagatcatatataggtgtgaggaagagaccttgggggaaatttgctgcagagatcagagatacaacaagaggagg |
300 |
Q |
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| T |
30698781 |
tgaagaactttcaaactaaagaagaaagatcatatataggtgtgaggaagagaccttgggggaaatttgctgcagagatcagagatacaacaagaggagg |
30698682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 24 - 300
Target Start/End: Complemental strand, 30719112 - 30718839
Alignment:
| Q |
24 |
taatgcatatgatgactagctcttacttcaataacccagatttggaaatgttgcaacaagatcctactaatattctctttgaaccatttcatcatgaccc |
123 |
Q |
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| T |
30719112 |
taatgcatacgatgagtagctcttttttccataacccagatttggaaatgttgcagcaagatcttactaatattctgtttgaaccatttcatcaagaccc |
30719013 |
T |
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| Q |
124 |
taatattcatgattatctttcctttgacatggttgaccaacaaggaccaacaaaaaatgaaccaaatcatgaactagtgaagaactttcaaactagagaa |
223 |
Q |
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| T |
30719012 |
ttatattcatgattatctttctttttacatggttgaccaacaaggaccaaacaaaaacgaaccaaataat---tcaatgaataattctgaacctaaagaa |
30718916 |
T |
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| Q |
224 |
gaaagatcatatataggtgtgaggaagagaccttgggggaaatttgctgcagagatcagagatacaacaagaggagg |
300 |
Q |
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| T |
30718915 |
gaaagatcatatataggtgtgaggaagagaccttgggggaaatttgctgcagagattagagatacaacaagaggagg |
30718839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 15815132 - 15815201
Alignment:
| Q |
231 |
catatataggtgtgaggaagagaccttgggggaaatttgctgcagagatcagagatacaacaagaggagg |
300 |
Q |
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| T |
15815132 |
catatataggtgtgaggaagagaccttgggggaaatttgctgcagaaatcagagatacagcaagaggagg |
15815201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 30710635 - 30710565
Alignment:
| Q |
230 |
tcatatataggtgtgaggaagagaccttgggggaaatttgctgcagagatcagagatacaacaagaggagg |
300 |
Q |
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| T |
30710635 |
tcatatataggtgttaggaaaagacgttggggaaaatatgctgcagaaatcagagatacaacaagaggagg |
30710565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 30656809 - 30656746
Alignment:
| Q |
231 |
catatataggtgtgaggaagagaccttgggggaaatttgctgcagagatcagagatacaacaag |
294 |
Q |
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| T |
30656809 |
catatataggtgtgaggaaaagaccttgggggaaatatgctgcagaaataagggacacaacaag |
30656746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 30689867 - 30689796
Alignment:
| Q |
229 |
atcatatataggtgtgaggaagagaccttgggggaaatttgctgcagagatcagagatacaacaagaggagg |
300 |
Q |
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| T |
30689867 |
atcatatataggtgtaagaaaaagaccttggggaaagtatgcagcagagatcagagacacaacaagaggagg |
30689796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 30671965 - 30671907
Alignment:
| Q |
236 |
ataggtgtgaggaagagaccttgggggaaatttgctgcagagatcagagatacaacaag |
294 |
Q |
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| T |
30671965 |
ataggtgtaagaaaaagaccttgggggaaatatgctgcagaaataagagacacaacaag |
30671907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 56539091 - 56539156
Alignment:
| Q |
230 |
tcatatataggtgtgaggaagagaccttgggggaaatttgctgcagagatcagagatacaacaaga |
295 |
Q |
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| T |
56539091 |
tcatatataggtgtgagaaaaagtctttggggaaaatatgcagcagagatcagagacacaacaaga |
56539156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 46625831 - 46625791
Alignment:
| Q |
231 |
catatataggtgtgaggaagagaccttgggggaaatttgct |
271 |
Q |
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| T |
46625831 |
catatataggtgcgagaaaaagaccttgggggaaatttgct |
46625791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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