View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2358_low_2 (Length: 321)
Name: NF2358_low_2
Description: NF2358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2358_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 30689809 - 30689587
Alignment:
| Q |
22 |
acaacaagaggaggaagaagggtttggctgggaacatttgatagtgctgaagatggtgctttagcttatgatcaagctgcattttcaatgagaggtgata |
121 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
30689809 |
acaacaagaggaggaagaagggtttggcttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggttatg |
30689710 |
T |
|
| Q |
122 |
atgttgtcctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcactcaagga |
221 |
Q |
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||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
30689709 |
atgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcactaaaaga |
30689610 |
T |
|
| Q |
222 |
tagacactataatcaaagaaaga |
244 |
Q |
| |
|
|| |||||| | |||||||||| |
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|
| T |
30689609 |
gaggcactatgaacaaagaaaga |
30689587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 30718856 - 30718630
Alignment:
| Q |
18 |
agatacaacaagaggaggaagaagggtttggctgggaacatttgatagtgctgaagatggtgctttagcttatgatcaagctgcattttcaatgagaggt |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30718856 |
agatacaacaagaggaggaagaagggtttggcttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggt |
30718757 |
T |
|
| Q |
118 |
gataatgttgtcctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcactca |
217 |
Q |
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|| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30718756 |
tatgatgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagcgattcaatatgattgcagagaagggtcttcacctgcacttgcactaa |
30718657 |
T |
|
| Q |
218 |
aggatagacactataatcaaagaaaga |
244 |
Q |
| |
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| || || |||||| | |||||||||| |
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|
| T |
30718656 |
aagagaggcactatgaacaaagaaaga |
30718630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 30710582 - 30710358
Alignment:
| Q |
18 |
agatacaacaagaggaggaagaagggtttggctgggaacatttgatagtgctgaagatggtgctttagcttatgatcaagctgcattttcaatgagaggt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30710582 |
agatacaacaagaggaggaagaagggtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggt |
30710483 |
T |
|
| Q |
118 |
gataatgttgtcctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcactca |
217 |
Q |
| |
|
|||||| | |||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
30710482 |
aataatgctttcctcaatttttctttcgaaagcgtcaaagaatctttgcaagagattcaatatgattgcagaaaagggtcttcacctgcacttgcactca |
30710383 |
T |
|
| Q |
218 |
aggatagacactataatcaaagaaa |
242 |
Q |
| |
|
| || |||||||| || |||||||| |
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|
| T |
30710382 |
aagagagacactacaaccaaagaaa |
30710358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 30698699 - 30698475
Alignment:
| Q |
18 |
agatacaacaagaggaggaagaagggtttggctgggaacatttgatagtgctgaagatggtgctttagcttatgatcaagctgcattttcaatgagaggt |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
30698699 |
agatacaacaagaggaggaagaagagtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattctcaatgagaggt |
30698600 |
T |
|
| Q |
118 |
gataatgttgtcctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcactca |
217 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| | |
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| T |
30698599 |
aataatgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcactaa |
30698500 |
T |
|
| Q |
218 |
aggatagacactataatcaaagaaa |
242 |
Q |
| |
|
| || || |||||| | |||||||| |
|
|
| T |
30698499 |
aagaaaggcactatgaacaaagaaa |
30698475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 30671914 - 30671694
Alignment:
| Q |
22 |
acaacaagaggaggaagaagggtttggctgggaacatttgatagtgctgaagatggtgctttagcttatgatcaagctgcattttcaatgagaggtgata |
121 |
Q |
| |
|
|||||||| || || | |||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30671914 |
acaacaaggggtggtaaaagggtttggcttggaacatttgacagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggtaata |
30671815 |
T |
|
| Q |
122 |
atgttgtcctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcactcaagga |
221 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30671814 |
atgccgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcactcaagga |
30671715 |
T |
|
| Q |
222 |
tagacactataatcaaagaaa |
242 |
Q |
| |
|
||||||| | | |||||||| |
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| T |
30671714 |
gagacactgtgaacaaagaaa |
30671694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 30656753 - 30656532
Alignment:
| Q |
22 |
acaacaagaggaggaagaagggtttggctgggaacatttgatagtgctgaagatggtgctttagcttatgatcaagctgcattttcaatgagaggtgata |
121 |
Q |
| |
|
|||||||| || || | |||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
30656753 |
acaacaaggggtggcaaaagggtttggttaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggtaata |
30656654 |
T |
|
| Q |
122 |
atgttgtcctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcactcaagga |
221 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || || |
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|
| T |
30656653 |
atgctgtgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcactaaaaga |
30656554 |
T |
|
| Q |
222 |
tagacactataatcaaagaaag |
243 |
Q |
| |
|
|| |||||| | ||||||||| |
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|
| T |
30656553 |
gaggcactatgaacaaagaaag |
30656532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 16252144 - 16252066
Alignment:
| Q |
39 |
aagggtttggctgggaacatttgatagtgctgaagatggtgctttagcttatgatcaagctgcattttcaatgagaggt |
117 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||| | || ||||||||||||||||||| ||||||||||||||| |
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|
| T |
16252144 |
aagggtatggttaggaacatttgatagtgctgaagcagcagcactagcttatgatcaagctgctttttcaatgagaggt |
16252066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 33042601 - 33042678
Alignment:
| Q |
40 |
agggtttggctgggaacatttgatagtgctgaagatggtgctttagcttatgatcaagctgcattttcaatgagaggt |
117 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| |||| || |||||| |||||||||||||| || ||||| ||||||||| |
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|
| T |
33042601 |
agggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttttccatgagaggt |
33042678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 30689297 - 30689248
Alignment:
| Q |
246 |
agaaactaaatttgagctcaaa-gagtactagtagaagtattcattgaac |
294 |
Q |
| |
|
|||||| ||||||||||||||| |||||| ||||| |||||||||||||| |
|
|
| T |
30689297 |
agaaacaaaatttgagctcaaaagagtacgagtagtagtattcattgaac |
30689248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 15815184 - 15815216
Alignment:
| Q |
18 |
agatacaacaagaggaggaagaagggtttggct |
50 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
15815184 |
agatacagcaagaggaggaagaagggtttggct |
15815216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 56539165 - 56539345
Alignment:
| Q |
22 |
acaacaagaggaggaagaagggtttggctgggaacatttgatagtgctgaagatggtgctttagcttatgatcaagctgcattttcaatgagaggtgata |
121 |
Q |
| |
|
||||||||| ||||||||| |||||||| ||||||||||| |||||||| |||| |||||||||||| |||||||||||||||||| |||||||| ||| |
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|
| T |
56539165 |
acaacaagaaaaggaagaagtgtttggcttggaacatttgacagtgctgaggatgctgctttagcttacgatcaagctgcattttcattgagaggtaata |
56539264 |
T |
|
| Q |
122 |
atgttgtcctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcac |
202 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
56539265 |
atgttgtgctcaatttttctgttcaaagggtcaaaggatatttgcaagagattcaatatgattgcagagaagagttttcac |
56539345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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