View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2359_low_3 (Length: 344)
Name: NF2359_low_3
Description: NF2359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2359_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 4407085 - 4406975
Alignment:
| Q |
18 |
gagctcatcggcttcaaacgtgattttaattgattggaaagttgttaaccacccagttgcaaatgttaatcttggcagcagcgaacaataataattttat |
117 |
Q |
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| T |
4407085 |
gagctcatcggcttcaaacgtgattttaattgattggaaagttgttaaccacccagttgcaaatgttaatcttggcagcagcgaacaataataattttat |
4406986 |
T |
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| Q |
118 |
gaggtggttac |
128 |
Q |
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| T |
4406985 |
gaggtggttac |
4406975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 186 - 292
Target Start/End: Complemental strand, 4406963 - 4406857
Alignment:
| Q |
186 |
tcacaacagctattactcatataaaatatatttcaaaagacacacttaaagtaataagaacagattataaaaggttataatttactagttagttattttt |
285 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4406963 |
tcacaatagctattactcatataaaatatatttcaaaagacacacttaaagtaataagaacagattataaaaggttataatttactagttagttattttt |
4406864 |
T |
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| Q |
286 |
tagctat |
292 |
Q |
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| T |
4406863 |
tagctat |
4406857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 291
Target Start/End: Complemental strand, 20619226 - 20619070
Alignment:
| Q |
131 |
taaaatattttttgaaaactaatagtagatttagccaataagaaagnnnnnnnnntcacaacagctattactcatataaaatatatttcaaaagacacac |
230 |
Q |
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| T |
20619226 |
taaaatattttttaaaaattaatagtaaatttaaccaataagaaa----aaaaaatcgcaataactactacacatataaaatatattttataaaatacac |
20619131 |
T |
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| Q |
231 |
ttaaagtaataagaacagattataaaaggttataatttactagttagttattttttagcta |
291 |
Q |
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| T |
20619130 |
ttacaacaaccataacagattataaagagttataatttactaattacttattttttagcta |
20619070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 292
Target Start/End: Original strand, 14950516 - 14950622
Alignment:
| Q |
186 |
tcacaacagctattactcatataaaatatatttcaaaagacacacttaaagtaataagaacagattataaaaggttataatttactagttagttattttt |
285 |
Q |
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||||||| ||||||| ||||||||| || |||| || | |||| ||||| || ||||| || |||||||| ||||||||||||| ||| || ||||| |
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| T |
14950516 |
tcacaacgactattacatatataaaatgtacttcataaaatacacctaaagcaacaagaatggaatataaaagattataatttactaattactttttttt |
14950615 |
T |
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| Q |
286 |
tagctat |
292 |
Q |
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||||||| |
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| T |
14950616 |
tagctat |
14950622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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