View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2359_low_4 (Length: 292)
Name: NF2359_low_4
Description: NF2359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2359_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 38931946 - 38931677
Alignment:
| Q |
8 |
aagcaaaggatgaactgaacactcaaatagggtatgatcgtttggtagaagagtcagacattccaaatcttccttacattcaaaacattatctacgagac |
107 |
Q |
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| T |
38931946 |
aagcaaaggatgaactgaacactcaaatagggtatgatcgtttggtagaagagtcagacattccaaatctttcttacattcaaaacattatctacgagac |
38931847 |
T |
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| Q |
108 |
acttcggttgtactctccagctccattattattgcctcgtttttcttcaaacgagtgcaatattgaaggatttactattccacgtgacacgatagttttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38931846 |
acttcggttgtactctccagctccattattattgcctcgtttttcttcaaacgagtgcaatattgaaggatttactattccacgtgacacgatagttttg |
38931747 |
T |
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| Q |
208 |
attaatgcatgggccattcaaagagatcctgaaacatggagtgatgcttcatgttttaagccagagagat |
277 |
Q |
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| T |
38931746 |
attaatgcatgggccattcaaagagatcctgaaacatggagtgatgcttcatgttttaagccagagagat |
38931677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 12151823 - 12151554
Alignment:
| Q |
8 |
aagcaaaggatgaactgaacactcaaatagggtatgatcgtttggtagaagagtcagacattccaaatcttccttacattcaaaacattatctacgagac |
107 |
Q |
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| T |
12151823 |
aagcaaaggatgaattatacaccaaaataggcaatgatcgtttggtagatgagtcagacatttcaaatcttccatacattcaaaacattatctacgagac |
12151724 |
T |
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| Q |
108 |
acttcggttgtactctccagctccattattattgcctcgtttttcttcaaacgagtgcaatattgaaggatttactattccacgtgacacgatagttttg |
207 |
Q |
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| T |
12151723 |
actaagattatactctcctgctccattactattacctcgtttttcttcggatgaatgtaatatcgaaggttatactattccacgtgacactatagttttg |
12151624 |
T |
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| Q |
208 |
attaatgcatgggccattcaaagagatcctgaaacatggagtgatgcttcatgttttaagccagagagat |
277 |
Q |
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|||||||||||||||||||||||||| |||||| |||| | ||||| |||||||||| |||||||||| |
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| T |
12151623 |
attaatgcatgggccattcaaagagacgatgaaacttggaataatgctgcatgttttaatccagagagat |
12151554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 38955786 - 38955844
Alignment:
| Q |
193 |
gacacgatagttttgattaatgcatgggccattcaaagagatcctgaaacatggagtga |
251 |
Q |
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| T |
38955786 |
gacaccatagtattgatcaatgcttgggccattcatagagaccctgaaacatggagtga |
38955844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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