View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2359_low_6 (Length: 256)
Name: NF2359_low_6
Description: NF2359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2359_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 4644441 - 4644651
Alignment:
| Q |
16 |
acaatcaatgagttaaacgatgaagatcagatatatcccacatcttttcaattaaaactcacgagtttgcaggttatataaacaaagaaagagaactaag |
115 |
Q |
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| T |
4644441 |
acaatcaatgagttaaatgatgtaga---gacatatcccacatctcttcaattaaaactcacgagtttgcaggttatgtaaacaaagaaagagaactaag |
4644537 |
T |
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| Q |
116 |
actataggttcttgctgcaatgaatttaatttggtatttttaacaaattttgaatccatatccttctatgttcatagcttttataaattaaattttgttt |
215 |
Q |
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| T |
4644538 |
actataggttcttgctgcaatgaatttaatttggtctttttaacaaattttgaatccatatcatgctatgtttatagcttttataaattatattttggtt |
4644637 |
T |
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| Q |
216 |
attctaatctaata |
229 |
Q |
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|||||||||||||| |
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| T |
4644638 |
attctaatctaata |
4644651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 4636467 - 4636622
Alignment:
| Q |
86 |
aggttatataaacaaagaaagagaactaagactataggttcttgctgcaatgaatttaatttggtatttttaacaaattttgaatccatatccttctatg |
185 |
Q |
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| T |
4636467 |
aggttatataaacaaagaaagagaactaagactataggttcttgctgcaatgaatttaatttggtatttttaacaaattttgaatccatatccttctatg |
4636566 |
T |
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| Q |
186 |
ttcatagcttttataaattaaattttgtttattctaatctaatactccatataagt |
241 |
Q |
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| T |
4636567 |
ttcatagcttttataaattaaatttttgttattctaatctaatactccatataagt |
4636622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 1798092 - 1798151
Alignment:
| Q |
164 |
tttgaatccatatccttctatgttcatagcttttataaattaaattttgtttattctaat |
223 |
Q |
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| T |
1798092 |
tttgaatccatatcctgctatgttcataacttttataaattaaattttggttattctaat |
1798151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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