View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2360_low_5 (Length: 237)
Name: NF2360_low_5
Description: NF2360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2360_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 33816377 - 33816486
Alignment:
| Q |
112 |
tgaattttacctgttagaaaccattcttgttgcagcttgggaggtggcagaaagagtttgtttttcagctgcctctgctgcttcaaaaaccttgtctgtc |
211 |
Q |
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| T |
33816377 |
tgaattttacctgttagaaaccattcttgttgcagcttgggaggtggcagaaagagtttgtttttcagctgcctctgctgcttcaaaaaccttgtctgtc |
33816476 |
T |
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| Q |
212 |
acattaaaag |
221 |
Q |
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| T |
33816477 |
acattaaaag |
33816486 |
T |
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Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 33816232 - 33816345
Alignment:
| Q |
1 |
tttaatgaaactatagaagaagnnnnnnn-tgtatatgtaagccaatcattaagggtaaaattgttatttggaatgagtaaaattcaatttaaacaatta |
99 |
Q |
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| T |
33816232 |
tttaatgaaactatagaagaagaagaaaaatgtatatgtaagccaatcattaagggtaaaattgttatttggaatgagtaaaattcaatttaaacaatta |
33816331 |
T |
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| Q |
100 |
aaatttcatttgtg |
113 |
Q |
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| T |
33816332 |
aaatttcctttgtg |
33816345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 43161212 - 43161120
Alignment:
| Q |
117 |
tttacctgttagaaaccattcttgttgcagcttgggaggtggcagaaagagtttgtttttcagctgcctctgctgcttcaaaaaccttgtctg |
209 |
Q |
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||||||||||||| |||||||| | |||||||| |||||||||||||||||||||||||||||| || || ||||| |||| ||| ||||||| |
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| T |
43161212 |
tttacctgttagagaccattctagatgcagctttggaggtggcagaaagagtttgtttttcagcagcttcagctgcatcaagaactttgtctg |
43161120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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