View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2361_high_7 (Length: 307)
Name: NF2361_high_7
Description: NF2361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2361_high_7 |
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| [»] chr4 (4 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 102 - 307
Target Start/End: Complemental strand, 44842154 - 44841949
Alignment:
| Q |
102 |
tggtggaaagatgccgttataatgaacggagatgggcttgagcaaacccagtcactgaggagtgaggggatgggaaaaggtgagaggaagatggcagata |
201 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44842154 |
tggtggaaagatgctgttataatgaacggagatgggcttgagcaaacccagtcactgaggagtgagggaatgggaaaaggtgagaggaagatggcagata |
44842055 |
T |
|
| Q |
202 |
atagacaaaaaatctagtgcatagagtgtataatagaatgtgtgagcttgattgttctaatggctctcaattattgtttataatggctcattgttgaggg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44842054 |
atagacaaaaaatctagtgcatagagtgtataatagaatgtgtgagcttgattgatctaatggctctcaattattgtttatgatggctcattgttgaggg |
44841955 |
T |
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| Q |
302 |
acttaa |
307 |
Q |
| |
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|||||| |
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| T |
44841954 |
acttaa |
44841949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 53045442 - 53045538
Alignment:
| Q |
7 |
aggagcatcttataggaacatggattggaaagaacagtgttgaggtgaaagatttatagtannnnnnnctagttctttctgaatgtgtgtgtctgtg |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
53045442 |
aggagcatcttataggaacatggattggaaagaacagtgttgaggtgaaagatttatagtatttttttccagttctttctgaatgtgtgtgtctgtg |
53045538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 279
Target Start/End: Complemental strand, 45394143 - 45394034
Alignment:
| Q |
171 |
atgggaaaaggtgagaggaagatggcagataatagacaaaaa-atctagtgcatagagtgtataatagaatgtgtgagcttgattgttctaatggctctc |
269 |
Q |
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||||||||||| ||| |||||||| ||| || ||||||||| |||||||||| | || ||||||||||| | || ||||||||| ||||||||||||| |
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| T |
45394143 |
atgggaaaaggggagcagaagatgggagagaacagacaaaaagatctagtgcagatagcctataatagaatatatgcgcttgattgatctaatggctctc |
45394044 |
T |
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| Q |
270 |
aattattgtt |
279 |
Q |
| |
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|||||||||| |
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| T |
45394043 |
aattattgtt |
45394034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 5228489 - 5228554
Alignment:
| Q |
219 |
tgcatagagtgtataatagaatgtgtgagcttgattgttctaatggctctcaattattgtttataatgg |
287 |
Q |
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||||||||||| |||||||||| |||| ||||||||| || || |||| |||||||||||||||||| |
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| T |
5228489 |
tgcatagagtgcataatagaatttgtgtgcttgattgatccaa---ctcttaattattgtttataatgg |
5228554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 307
Target Start/End: Original strand, 30581165 - 30581289
Alignment:
| Q |
184 |
agaggaagatggcagataatagacaaaaa-atctagtgcatagagtgtataatagaatgtgtgagcttgattgttctaatggctctcaattattgtttat |
282 |
Q |
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|||||||||||| ||| || ||| ||||| |||||||||||| ||||||||||||||| | | |||||||| |||||||||||| ||||||||||||| |
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| T |
30581165 |
agaggaagatgggagagaagagataaaaagatctagtgcatatagtgtataatagaatctatactcttgattgatctaatggctcttaattattgtttat |
30581264 |
T |
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| Q |
283 |
aatggctcattgttgagggacttaa |
307 |
Q |
| |
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| ||| ||| || |||||||||||| |
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| T |
30581265 |
agtggttcactggtgagggacttaa |
30581289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 307
Target Start/End: Original strand, 36611658 - 36611761
Alignment:
| Q |
204 |
agacaaaaaatctagtgcatagagtgtataatagaatgtgtgagcttgattgttctaatggctctcaattattgtttataatggctcattgttgagggac |
303 |
Q |
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||||||||||||||||||||| |||||||||| ||| |||| ||||||| ||||| | ||| |||| ||||||| | ||| ||| || |||||||| |
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| T |
36611658 |
agacaaaaaatctagtgcatacggtgtataataaaatatgtgcacttgattaatctaacgattcttaattgttgtttacagtggttcactgatgagggac |
36611757 |
T |
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| Q |
304 |
ttaa |
307 |
Q |
| |
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|||| |
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| T |
36611758 |
ttaa |
36611761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 307
Target Start/End: Original strand, 20606820 - 20606944
Alignment:
| Q |
184 |
agaggaagatggcagataatagacaaaaa-atctagtgcatagagtgtataatagaatgtgtgagcttgattgttctaatggctctcaattattgtttat |
282 |
Q |
| |
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|||||||||||| ||| || ||| ||||| |||||||||||| ||||||||||||||| | | |||||||| |||||||||||| ||||||||||||| |
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| T |
20606820 |
agaggaagatgggagagaagagataaaaagatctagtgcatatagtgtataatagaatctatactcttgattgatctaatggctcttaattattgtttat |
20606919 |
T |
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| Q |
283 |
aatggctcattgttgagggacttaa |
307 |
Q |
| |
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| ||| ||| | |||||||||||| |
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| T |
20606920 |
agtggttcaccggtgagggacttaa |
20606944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 40584304 - 40584364
Alignment:
| Q |
219 |
tgcatagagtgtataatagaatgtgtgagcttgattgttctaatggctctcaattattgtt |
279 |
Q |
| |
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|||||| ||| ||||||||||| | || ||||||||| ||||||||||||||||||||||| |
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| T |
40584304 |
tgcatatagtctataatagaatctatgcgcttgattgatctaatggctctcaattattgtt |
40584364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 15962529 - 15962489
Alignment:
| Q |
21 |
ggaacatggattggaaagaacagtgttgaggtgaaagattt |
61 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
15962529 |
ggaacgtggataggaaagaacagtgttgaggtgaaagattt |
15962489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 40367055 - 40366949
Alignment:
| Q |
171 |
atgggaaaaggtgagaggaagatggcagataatagacaaaaa-atctagtgcatagagtgtataatagaatgtgtgagcttgattgttctaatggctctc |
269 |
Q |
| |
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||||||||||| ||| |||||||| ||| || | ||||||| |||||||||| | || ||||||||||| | || ||||||||| ||||||||||||| |
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| T |
40367055 |
atgggaaaaggggagcagaagatgggagagaacatacaaaaagatctagtgcagatagcctataatagaatctatgtgcttgattgatctaatggctctc |
40366956 |
T |
|
| Q |
270 |
aattatt |
276 |
Q |
| |
|
||||||| |
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| T |
40366955 |
aattatt |
40366949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 283
Target Start/End: Complemental strand, 38883397 - 38883287
Alignment:
| Q |
176 |
aaaaggtgagaggaagatggcagataatagac---aaaaaatctagtgcatagagtgtataatagaatgtgtgagcttgattgttctaatggctctcaat |
272 |
Q |
| |
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|||||||||||||||||||| ||| || |||| |||| ||||| || || ||||||| ||||||| ||||| |||||||| |||||| ||||| ||| |
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| T |
38883397 |
aaaaggtgagaggaagatgggagagaagagacagaaaaatatctattgtatggagtgtacgatagaatatgtgatcttgattgatctaatagctcttaat |
38883298 |
T |
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| Q |
273 |
tattgtttata |
283 |
Q |
| |
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|||| |||||| |
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| T |
38883297 |
tattatttata |
38883287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 283
Target Start/End: Complemental strand, 16718393 - 16718314
Alignment:
| Q |
204 |
agacaaaaaatctagtgcatagagtgtataatagaatgtgtgagcttgattgttctaatggctctcaattattgtttata |
283 |
Q |
| |
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||||||||||||||||||||| |||||||||| ||| |||| |||||||| ||||| | |||||||| ||| ||||| |
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| T |
16718393 |
agacaaaaaatctagtgcataaggtgtataataaaatatgtgtgcttgattaatctaacgattctcaattgttgattata |
16718314 |
T |
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