View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2361_low_12 (Length: 308)
Name: NF2361_low_12
Description: NF2361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2361_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 1120677 - 1120886
Alignment:
| Q |
7 |
aaaacaacctttgaaaccttatgaagattgggtttgatttcatcagaagaagaacgaccaatagcaacttgcatcactttgttagatccaagaaaaaact |
106 |
Q |
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| T |
1120677 |
aaaacaacctttgaaaccttatgaagattgggtttgatttcatcagaagaagaacgaccaatagcaacttgcatcactttgttagatccaagaaaaaact |
1120776 |
T |
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| Q |
107 |
tgctacttgattgtaattgttccctgaactctttcaatttcgaatttctcatattctgaaaattgaaaacgtaaattgaactgtatttttcagctgcatc |
206 |
Q |
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| T |
1120777 |
tgctacttgattgtaattgttccctgaactctttcaatttcgaatttctcatattctgaaaattgaaaacgtaaattgaactgtatttttcagctgcatc |
1120876 |
T |
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| Q |
207 |
tcttattcca |
216 |
Q |
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| T |
1120877 |
tcttattcca |
1120886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 212 - 308
Target Start/End: Complemental strand, 52926185 - 52926089
Alignment:
| Q |
212 |
ttccaccctgcatttccactcttgaaggtggtcttgttcaacttgctattgaagttgaggatcgtgctcaccgctccgcaatcaccagagtaaatgc |
308 |
Q |
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| T |
52926185 |
ttccaccctgcatttccactcttgaaggtggtcttgttcaacttgctattgaagttgaagatcgtgctcaccgctccgcaatcaccagagtaaatgc |
52926089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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