View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2361_low_14 (Length: 302)
Name: NF2361_low_14
Description: NF2361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2361_low_14 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 61 - 302
Target Start/End: Original strand, 42638674 - 42638915
Alignment:
| Q |
61 |
gcaacatttgagtacaacatatttgtacactttgttccatcatcacgaacaactttactggctggtaaaattgtcagagacaaaacagtccctagtgaca |
160 |
Q |
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| T |
42638674 |
gcaacatttgagtacaacatatttgtacactttgttccatcatcacgaacaactttactggctggtaaaattgtcagagacaaaacagtccctagtgaca |
42638773 |
T |
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| Q |
161 |
taaaagccataaaaccaatataagtgccatagttaaccgtagcagcttgatcaccacgattgtaattaagaataaaaggaattaaaccactaataacccc |
260 |
Q |
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| T |
42638774 |
taaaagccataaaaccaatataagtgccatcgttaaccgtagcagcttgatcaccacgattgtaattaagaataaaaggaattaaaccaccaataacccc |
42638873 |
T |
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| Q |
261 |
acccatattgaaaatactccagaaaattgaaatgtaagttcc |
302 |
Q |
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| T |
42638874 |
acccatattgaaaatactccagaaaattgaaatgtaagttcc |
42638915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 61 - 302
Target Start/End: Original strand, 42631530 - 42631771
Alignment:
| Q |
61 |
gcaacatttgagtacaacatatttgtacactttgttccatcatcacgaacaactttactggctggtaaaattgtcagagacaaaacagtccctagtgaca |
160 |
Q |
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| T |
42631530 |
gcaacatttgagtacaacatatttgtacactttgttccatcatcacgaacaactttactagctggtaaaatagttagagacaaaacagtccctagtgaca |
42631629 |
T |
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| Q |
161 |
taaaagccataaaaccaatataagtgccatagttaaccgtagcagcttgatcaccacgattgtaattaagaataaaaggaattaaaccactaataacccc |
260 |
Q |
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| T |
42631630 |
taaaagccataaaaccaatataagttccatcattaaccgtagcagcttgatcaccacgattgtaattaagaataaaaggaatcaacccaccaataacacc |
42631729 |
T |
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| Q |
261 |
acccatattgaaaatactccagaaaattgaaatgtaagttcc |
302 |
Q |
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| T |
42631730 |
acccatgttgaaaatactccagaaaattgaaatgtaagttcc |
42631771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 52926155 - 52926220
Alignment:
| Q |
1 |
ccaccttcaagagtggaaatgcagggtggaacgggagcatcctgtgggttggtttcagcagcaaca |
66 |
Q |
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| T |
52926155 |
ccaccttcaagagtggaaatgcagggtggaacgggagcatcctgtgggttggtttcagcagcaaca |
52926220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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