View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2361_low_17 (Length: 252)
Name: NF2361_low_17
Description: NF2361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2361_low_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 6729529 - 6729290
Alignment:
| Q |
13 |
cagaacctgtgcttgaaccagtccttactcctatatccaacaccacactacctctaacccacacaaactcatcacctttcactggatctgcaacaacccc |
112 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
6729529 |
cagaacctgtgcttgaaccaatccttactcctatatccaacaccacactacctctaacccacacaaactcatcacccttcactagatctgcaacaacccc |
6729430 |
T |
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| Q |
113 |
attctctacctcaacaaattttattcctttctctacactgttatcacttcatcacactaccccccttaccgtacctctttcgcaaacccaaacctatggc |
212 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6729429 |
attctctacctcaacaaattttattcttttctctacaccgttatcacttcatcacactaccccccttaccgtacctctttcacaaacccaaacctatggc |
6729330 |
T |
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| Q |
213 |
tatttcactcagccgattgttaacacatcgatctatccac |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
6729329 |
tatttcactcagccgattgttaacacatcgatctatccac |
6729290 |
T |
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