View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2361_low_18 (Length: 208)
Name: NF2361_low_18
Description: NF2361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2361_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 53045537 - 53045442
Alignment:
| Q |
32 |
acagacacacacattcagaaagaactagnnnnnnntactataaatctttcacctcaacactgttctttccaatccatgttcctataagatactcct |
127 |
Q |
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| T |
53045537 |
acagacacacacattcagaaagaactggaaaaaaatactataaatctttcacctcaacactgttctttccaatccatgttcctataagatgctcct |
53045442 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 15962489 - 15962529
Alignment:
| Q |
73 |
aaatctttcacctcaacactgttctttccaatccatgttcc |
113 |
Q |
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| T |
15962489 |
aaatctttcacctcaacactgttctttcctatccacgttcc |
15962529 |
T |
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