View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2361_low_1_N (Length: 656)

Name: NF2361_low_1_N
Description: NF2361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2361_low_1_N
NF2361_low_1_N
[»] chr4 (1 HSPs)
chr4 (11-627)||(53044922-53045538)
[»] chr2 (1 HSPs)
chr2 (53-190)||(15962489-15962626)


Alignment Details
Target: chr4 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 11 - 627
Target Start/End: Complemental strand, 53045538 - 53044922
Alignment:
Q  11 cacagacacacacattcagaaagaactagnnnnnnntactataaatctttcacctcaacactgttctttccaatccatgttcctataagatgctcctccc 110  Q
    ||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53045538 cacagacacacacattcagaaagaactggaaaaaaatactataaatctttcacctcaacactgttctttccaatccatgttcctataagatgctcctccc 53045439  T
Q  111 tatcttctcctggatatgaatactgaaagatgtagcaatctccgctataaaattttgactggtcagtggctgcgagaagannnnnnncttgaccattcac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  53045438 tatcttctcctggatatgaatactgaaagatgtagcaatctccgctataaaattttgactggtcagtggctgcgagaagatttttttcttgaccattcac 53045339  T
Q  211 acgccaaacctgaggagttatggtataacacttgtcaacaacataaacaattaagcaaaagaaaatgttggaaatgaagtctattattaaaatcacaatc 310  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53045338 acgccaaacctgagaagttatggtataacacttgtcaacaacataaacaattaagcaaaagaaaatgttggaaatgaagtctattattaaaatcacaatc 53045239  T
Q  311 aatccatccaagtaaggataagtacagaacatgtcttttgaaatttctcaagagattttgaatccttaaatccttatgttgtagaatgtgagaaacttaa 410  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  53045238 aattcatccaagtaaggataagtacagaacatgtcttttgaaatttctcaagagattttgaatccttaaatccttatgttgtagaatgtgagaaaattaa 53045139  T
Q  411 ttggaataccaagccaaaaggacgctactcagaatatctttttcaatccttaaataaggttatatacctatcactagtaggagaaataaatcattttaca 510  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  53045138 ttggaataccaagccaaaaggacgctactcagaatagctttttcaatccttaaatgaggttatatacctatcactagtaggagaaataaatcattttaca 53045039  T
Q  511 gttgactggctcctaacttgatcgctagaaaaaatctctaacatagtcttattatggcccctttagtttccattgatttagttttggactgtaaaggaca 610  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53045038 gttgactggctcctaacttaatcgctagaaaaaatctctaacatagtcttattatggcccctttagtttccattgatttagttttggactgtaaaggaca 53044939  T
Q  611 ataccttaccaactgga 627  Q
    |||||||||||||||||    
T  53044938 ataccttaccaactgga 53044922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 53 - 190
Target Start/End: Original strand, 15962489 - 15962626
Alignment:
Q  53 aaatctttcacctcaacactgttctttccaatccatgttcctataagatgctcctccctatcttctcctggatatgaatactgaaagatgtagcaatctc 152  Q
    ||||||||||||||||||||||||||||| ||||| ||||| || |||   || ||| |||||||||| ||||| ||||| ||||||||| |||||||||    
T  15962489 aaatctttcacctcaacactgttctttcctatccacgttccaatgagacagtcgtccttatcttctccaggatacgaatattgaaagatgaagcaatctc 15962588  T
Q  153 cgctataaaattttgactggtcagtggctgcgagaaga 190  Q
    | |||||||||||||| || ||||  |||| |||||||    
T  15962589 cactataaaattttgattgatcagaagctgggagaaga 15962626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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