View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2361_low_2 (Length: 649)
Name: NF2361_low_2
Description: NF2361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2361_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 212 - 509
Target Start/End: Original strand, 24506256 - 24506553
Alignment:
| Q |
212 |
caatggatctttctctattattacccttg-tgccccaccaaaaggcacaaacaaccttctctattttttcatataaacccttagggagcagaaaaccact |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24506256 |
caatggatctttctctattattacccttgctgccccaccaaaaggcacaaacaaccttctctattttttcacataaacccttagggagcagaaaaccact |
24506355 |
T |
|
| Q |
311 |
catgaaataggtgggtatggcttgagaaactgcccgaatgaggacccctcttccttcaacagacagacttttctccttccaacctttgagattcttccat |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24506356 |
catgaaataggtgggtatggcttgagaaactgccccaatgaggacccctcttccttcaaaagacagacttttctccttccaacctttgagattcttccat |
24506455 |
T |
|
| Q |
411 |
atcctatccatgatgaatttaaaatcttgctccttagatctaccaaactgagttcgcatcccaaggtatttgtgaattttatcagtgattttaataggg |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24506456 |
atcctatccatgatgaatttaaaatcttgctccttagatctcccaaactgagttggcatcccaaggta-ttgtgaattttatcagtgattttaataggg |
24506553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 24506044 - 24506219
Alignment:
| Q |
30 |
cctccaagcaaagcttggactatttccaatgggagcatgtagaatatccgtattgggaaagtattcggccttgtaacttttagcaatgagggattcaggt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24506044 |
cctccaagcaaagcttggactatttccaatgggagcatgtagaatatccgtattgggaaagtattcggccttgtaacttttagcaatgatggattcaggt |
24506143 |
T |
|
| Q |
130 |
tgcttgtggaagcgccagacttgcttagctagcatagctaagttgaaatctctaagaatcttaaaacccataccaa |
205 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24506144 |
tgcttgtggaagcgccagacttggttagctagcatagctaacttgaaatctctaagaatcttaaaacccataccaa |
24506219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 552 - 620
Target Start/End: Original strand, 24506551 - 24506619
Alignment:
| Q |
552 |
gggctgaaaatcatttgagatttgtctaaattaactttctgaccagaggctttttgatattgttggaga |
620 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
24506551 |
gggctgaaaatcatttcagatttgtctaaattaactttctgaccagaggctttttgatgttgatggaga |
24506619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 354 - 508
Target Start/End: Original strand, 23860143 - 23860297
Alignment:
| Q |
354 |
acccctcttccttcaacagacagacttttctccttccaacctttgagattcttccatatcctatccatgatgaatttaaaatcttgctccttagatctac |
453 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| ||||| || || | || ||||| || |||||||||| ||| ||||||||||| ||||| ||||| | |
|
|
| T |
23860143 |
acccctcttccttcaaaagagagacttttctctttccagcccttcaactttttccaaattctatccatgaggaagttaaaatcttgttccttggatctgc |
23860242 |
T |
|
| Q |
454 |
caaactgagttcgcatcccaaggtatttgtgaattttatcagtgattttaatagg |
508 |
Q |
| |
|
|||| ||||| |||| || || ||||||| || |||||| ||||||| ||||| |
|
|
| T |
23860243 |
caaaatgagtaggcatgcccagatatttgttgatgttatcattgattttgatagg |
23860297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 481
Target Start/End: Complemental strand, 42707178 - 42706997
Alignment:
| Q |
300 |
agaaaaccactcatgaaataggtgggtatggcttgagaaactgcccgaatgaggacccctcttccttcaacagacagacttttctccttccaacctttga |
399 |
Q |
| |
|
||||||| ||||||| | || || || ||| |||||| |||||| | |||||||| ||||| || |||| || | |||||| |||||||| || || | |
|
|
| T |
42707178 |
agaaaacaactcatgtagtatgtaggaatgacttgagtaactgctctgatgaggactcctctgccctcaaaggataaacttttttccttccagcccttta |
42707079 |
T |
|
| Q |
400 |
gattcttccatatcctatccatgatgaatttaaaatcttgctccttagatctaccaaactgagttcgcatcccaaggtattt |
481 |
Q |
| |
|
| || ||||| ||||||||||| ||||| | ||||| || || || ||||| |||||||| ||| ||| ||||||||||| |
|
|
| T |
42707078 |
gctttttccagatcctatccataatgaagctgaaatcctgttcttttgatctgccaaactgggttggcaaaccaaggtattt |
42706997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 303 - 475
Target Start/End: Complemental strand, 43249129 - 43248957
Alignment:
| Q |
303 |
aaaccactcatgaaataggtgggtatggcttgagaaactgcccgaatgaggacccctcttccttcaacagacagacttttctccttccaacctttgagat |
402 |
Q |
| |
|
|||| |||||| |||| || ||||| || |||| |||||||| ||| | || || |||||||||| ||| |||| ||| || ||||| ||||| || | |
|
|
| T |
43249129 |
aaacaactcatataatatgtaggtatagcctgagcaactgccctaattaaaactccccttccttcaaaagagagacatttttctttccaccctttaagct |
43249030 |
T |
|
| Q |
403 |
tcttccatatcctatccatgatgaatttaaaatcttgctccttagatctaccaaactgagttcgcatcccaag |
475 |
Q |
| |
|
| ||||||||| ||||||||||||| | ||||||||||||||| || || ||||| ||||| |||||||||| |
|
|
| T |
43249029 |
ttttccatatcttatccatgatgaagtgaaaatcttgctcctttgacctcccaaattgagtaggcatcccaag |
43248957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 414 - 508
Target Start/End: Original strand, 16428085 - 16428179
Alignment:
| Q |
414 |
ctatccatgatgaatttaaaatcttgctccttagatctaccaaactgagttcgcatcccaaggtatttgtgaattttatcagtgattttaatagg |
508 |
Q |
| |
|
|||||||| ||||| || || ||||| ||||||||||||||||| || || |||| || || ||||||||||||||| || ||||||||||||| |
|
|
| T |
16428085 |
ctatccataatgaaatttaagtcttgttccttagatctaccaaagtgggtaggcatacccagatatttgtgaattttagcattgattttaatagg |
16428179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 300 - 457
Target Start/End: Original strand, 24005717 - 24005874
Alignment:
| Q |
300 |
agaaaaccactcatgaaataggtgggtatggcttgagaaactgcccgaatgaggacccctcttccttcaacagacagacttttctccttccaacctttga |
399 |
Q |
| |
|
||||||| |||||||| |||||| || || ||||||| ||| ||| ||| || | ||||| ||||||| || |||| |||||| ||||||||||| | |
|
|
| T |
24005717 |
agaaaacaactcatgatataggtagggattgcttgagcaacaaccctaataagaattcctctgccttcaaaggaaagacatttctctttccaacctttca |
24005816 |
T |
|
| Q |
400 |
gattcttccatatcctatccatgatgaatttaaaatcttgctccttagatctaccaaa |
457 |
Q |
| |
|
|| |||||||| || |||||||| || ||||| || |||||||||||||| ||||| |
|
|
| T |
24005817 |
actttttccatattctgtccatgataaagttaaagtcctgctccttagatcttccaaa |
24005874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 43944460 - 43944507
Alignment:
| Q |
139 |
aagcgccagacttgcttagctagcatagctaagttgaaatctctaaga |
186 |
Q |
| |
|
|||||||||||||| || || |||||||| |||||||||||||||||| |
|
|
| T |
43944460 |
aagcgccagacttgtttggccagcatagccaagttgaaatctctaaga |
43944507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 243 - 448
Target Start/End: Complemental strand, 48916757 - 48916552
Alignment:
| Q |
243 |
ccccaccaaaaggcacaaacaaccttctctattttttcatataaacccttagggagcagaaaaccactcatgaaataggtgggtatggcttgagaaactg |
342 |
Q |
| |
|
|||||||| |||||||||||| ||||||| || || ||| | | ||||||||| || ||||||| |||||||| |||||| | ||| ||||| | |||| |
|
|
| T |
48916757 |
ccccaccagaaggcacaaacagccttctcaatcttgtcacaaagacccttaggaaggagaaaacaactcatgatataggtagatattgcttgtgccactg |
48916658 |
T |
|
| Q |
343 |
cccgaatgaggacccctcttccttcaacagacagacttttctccttccaacctttgagattcttccatatcctatccatgatgaatttaaaatcttgctc |
442 |
Q |
| |
|
| | || |||| ||||| ||||||| ||| || ||||| ||||||||||| || | || ||||| | |||||||| | |||| |||||||||||| |
|
|
| T |
48916657 |
ctcttataaggattcctctgccttcaaaagagaggcttttttccttccaacccttcaacttgttccaaactctatccattagaaattgaaaatcttgctc |
48916558 |
T |
|
| Q |
443 |
cttaga |
448 |
Q |
| |
|
||||| |
|
|
| T |
48916557 |
tttaga |
48916552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 363 - 482
Target Start/End: Original strand, 41093374 - 41093493
Alignment:
| Q |
363 |
ccttcaacagacagacttttctccttccaacctttgagattcttccatatcctatccatgatgaatttaaaatcttgctccttagatctaccaaactgag |
462 |
Q |
| |
|
||||||| ||| | ||||||||||||||||||||| || || ||| |||||||||| || || ||||||||||| ||||| || || | ||| |||| |
|
|
| T |
41093374 |
ccttcaaaagataaacttttctccttccaacctttaagttttttctgactcctatccataataaaattaaaatcttgttcctttgaccttcgaaattgag |
41093473 |
T |
|
| Q |
463 |
ttcgcatcccaaggtatttg |
482 |
Q |
| |
|
|| |||| |||||||||||| |
|
|
| T |
41093474 |
ttggcataccaaggtatttg |
41093493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 415 - 463
Target Start/End: Complemental strand, 10727681 - 10727633
Alignment:
| Q |
415 |
tatccatgatgaatttaaaatcttgctccttagatctaccaaactgagt |
463 |
Q |
| |
|
||||||||||||| || ||||||||| |||| ||||| ||||||||||| |
|
|
| T |
10727681 |
tatccatgatgaaattgaaatcttgcacctttgatctcccaaactgagt |
10727633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University