View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2361_low_3 (Length: 649)
Name: NF2361_low_3
Description: NF2361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2361_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 10 - 626
Target Start/End: Original strand, 6347803 - 6348424
Alignment:
| Q |
10 |
aataatattcaattactaatattttgctaatttgagcgaaacaatactcagatacttaaataatttatatttgagagtttttcagtggnnnnnnnnntta |
109 |
Q |
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| T |
6347803 |
aataatattcaattactaatattttgttaatttgagtgaaacaatactcagatacttaaataatttatatttgagagtttttcagtggaaaaaaaa-tta |
6347901 |
T |
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| Q |
110 |
acaatatgatattttcaaaatctcaaattatagagcattggctcaagcaacttgtggttattgtacctactatatgattttcttgttccacatcaatcac |
209 |
Q |
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| T |
6347902 |
acaatatgatatttacaaaatctcaaattatagaccattggctcaagcaacttgtggttattgtacctactatatgattttcttgttccacatcaatcac |
6348001 |
T |
|
| Q |
210 |
ccatcatcatctactataagaacaagtcatcattgtatatagcaacaaattatgtctttcttaaaagaacaaagc-atcttgaaattgactgtcatgtgg |
308 |
Q |
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| T |
6348002 |
ccatcatcatctactctaagaacaagtcatcattgtatatagcaacaaattatgtctttcttaaaagaataaaggtatcttgaaattgactgtcatgtgg |
6348101 |
T |
|
| Q |
309 |
ttcgtaacaaagtgcaagcaggaattttgcttttacctccaatatcatctaaggaacaagttggaga-----catattgacaaagtaattgcatctagga |
403 |
Q |
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| T |
6348102 |
ttcgtaacaaagtgcaagtaggaattttgcttttacctccaatatcatctaaggaacaagttggagacgagacatattgacaaagtaattgcatctagga |
6348201 |
T |
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| Q |
404 |
ccttcaacaccttgcattacaagctatgaatgattgacatacattctaacttgagggggattttaattgtaaggacaagaaagaatagaagtgttgcttg |
503 |
Q |
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| T |
6348202 |
ccttcaacaccttgcattacaagctatgaatgattgacatacattctaacttgaggggggttttaatcgtaaggacaagaaagaatagaagtgttgcttg |
6348301 |
T |
|
| Q |
504 |
taatacaagttagttgataacggttttgtgcgttagttataattgataacaaactctagagaaatcacaacatttataaataggatcttagtctttttaa |
603 |
Q |
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| T |
6348302 |
taatacaagttagttgataacggttttgtgcgttagttataattgataacaaactctagagaaatcacaacatttataaataggatcttagtctttttaa |
6348401 |
T |
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| Q |
604 |
tattgatgttccctccattttct |
626 |
Q |
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| T |
6348402 |
tattgatgttccctccattttct |
6348424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 18962719 - 18962675
Alignment:
| Q |
266 |
tttcttaaaagaacaaagcatcttgaaattgactgtcatgtggtt |
310 |
Q |
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| T |
18962719 |
tttcataaaaggacaaagcatcttgagattgactgtcatttggtt |
18962675 |
T |
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