View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2361_low_9 (Length: 324)

Name: NF2361_low_9
Description: NF2361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2361_low_9
NF2361_low_9
[»] chr3 (5 HSPs)
chr3 (103-279)||(6942572-6942749)
chr3 (103-279)||(6787970-6788151)
chr3 (103-277)||(6939399-6939574)
chr3 (157-263)||(8467041-8467147)
chr3 (288-324)||(6788174-6788210)
[»] chr4 (1 HSPs)
chr4 (177-267)||(48681542-48681632)
[»] chr5 (4 HSPs)
chr5 (190-275)||(28362649-28362734)
chr5 (120-227)||(4314182-4314290)
chr5 (190-275)||(1569745-1569828)
chr5 (165-219)||(42172783-42172837)
[»] chr2 (2 HSPs)
chr2 (170-263)||(33720155-33720252)
chr2 (165-236)||(6683704-6683775)
[»] chr8 (1 HSPs)
chr8 (176-263)||(5354188-5354275)
[»] chr6 (1 HSPs)
chr6 (190-251)||(16519714-16519775)
[»] chr1 (1 HSPs)
chr1 (190-263)||(34564829-34564902)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 103 - 279
Target Start/End: Complemental strand, 6942749 - 6942572
Alignment:
Q  103 actgggggtacggttcaggggtaatgttgtaatctgaacaatagt-tttatacacaagttgtgcattgtaaaccttaatctttcactcataataaaaagg 201  Q
    |||||||||||||||||||| | ||||||||||||| |||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||||||||    
T  6942749 actgggggtacggttcagggttgatgttgtaatctggacaatagtgtttatacacaagttgtgcattgtaaacattactctttctctcataataaaaagg 6942650  T
Q  202 aactgcagctgctctgcagtcggagacttaggcaatattggccgaacttcgttgccaaacatattgtgttcattattt 279  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||  ||||||||||||||    
T  6942649 aactgcagctgctctgcagtcggagacgtaggcaatattggctgaacttcgttaccaaacatcgtgtgttcattattt 6942572  T

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Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 103 - 279
Target Start/End: Original strand, 6787970 - 6788151
Alignment:
Q  103 actgggggtacggttcaggggtaatgttgtaatctgaacaatagtttt-----atacacaagttgtgcattgtaaaccttaatctttcactcataataaa 197  Q
    |||||||||| ||||||||||| ||||||||||||| |||||||| ||     |||||||||||||||||||||||||||||||||||||||||||||||    
T  6787970 actgggggtatggttcaggggtgatgttgtaatctggacaatagtgtttaattatacacaagttgtgcattgtaaaccttaatctttcactcataataaa 6788069  T
Q  198 aaggaactgcagctgctctgcagtcggagacttaggcaatattggccgaacttcgttgccaaacatattgtgttcattattt 279  Q
    |||||||||||||| |||||||||||||||  ||||||||||||||||||||||||| ||||||||  |||||| |||||||    
T  6788070 aaggaactgcagcttctctgcagtcggagatgtaggcaatattggccgaacttcgttaccaaacatcgtgtgtttattattt 6788151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 103 - 277
Target Start/End: Complemental strand, 6939574 - 6939399
Alignment:
Q  103 actgggggtacggttcaggggtaatgttgtaatctgaacaatagtttt-atacacaagttgtgcattgtaaaccttaatctttcactcataataaaaagg 201  Q
    ||||||||||||||||| || | ||||||||||||| ||||||||||| ||||||| |||||||||||||||| ||| |||||| |||||||||||||||    
T  6939574 actgggggtacggttcacggttgatgttgtaatctggacaatagtttttatacacacgttgtgcattgtaaacattactctttctctcataataaaaagg 6939475  T
Q  202 aactgcagctgctctgcagtcggagacttaggcaatattggccgaacttcgttgccaaacatattgtgttcattat 277  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||  ||||||||||||    
T  6939474 aactgcagctgctctgcagtcggagacgtaggcaatattggctgaacttcgttaccaaacatcgtgtgttcattat 6939399  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 8467147 - 8467041
Alignment:
Q  157 aagttgtgcattgtaaaccttaatctttcactcataataaaaaggaactgcagctgctctgcagtcggagacttaggcaatattggccgaacttcgttgc 256  Q
    |||||||||| |||||||| |||||||||| | |||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| |    
T  8467147 aagttgtgcactgtaaaccctaatctttcattgataatacaaaggaactgcagcttctctacagtcggagacgtaggcaatattggccgaacttcgttac 8467048  T
Q  257 caaacat 263  Q
    |||||||    
T  8467047 caaacat 8467041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 6788174 - 6788210
Alignment:
Q  288 tttgatttttgaacgggtttgctgttctaacatactt 324  Q
    |||||||||||||||||||||||| ||||||||||||    
T  6788174 tttgatttttgaacgggtttgctgatctaacatactt 6788210  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 48681542 - 48681632
Alignment:
Q  177 taatctttcactcataataaaaaggaactgcagctgctctgcagtcggagacttaggcaatattggccgaacttcgttgccaaacatattg 267  Q
    ||||||| |||| |||||| ||||||||||||||  ||||||| ||||||||  || ||| |||||||||||||| || ||||||||||||    
T  48681542 taatcttccactgataatataaaggaactgcagccactctgcattcggagacgcagacaaaattggccgaacttcattaccaaacatattg 48681632  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 28362649 - 28362734
Alignment:
Q  190 ataataaaaaggaactgcagctgctctgcagtcggagacttaggcaatattggccgaacttcgttgccaaacatattgtgttcatt 275  Q
    |||||| |||||||||||||||||||||||||| ||||| ||||||| |||||   ||||| ||| ||||||||  ||||||||||    
T  28362649 ataatacaaaggaactgcagctgctctgcagtctgagacataggcaaaattggttaaactttgttaccaaacatcgtgtgttcatt 28362734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 4314290 - 4314182
Alignment:
Q  120 ggggtaatgttgtaatctgaacaatagt-tttatacacaagttgtgcattgtaaaccttaatctttcactcataataaaaaggaactgcagctgctctgc 218  Q
    |||||||| |||||||||| ||  |||| |||| | ||||||| | |||||||||||  |||||||| || |||||| ||  ||||||||||||||||||    
T  4314290 ggggtaatattgtaatctggaccgtagtatttaaatacaagttctacattgtaaacccaaatctttcgctgataatacaacagaactgcagctgctctgc 4314191  T
Q  219 agtcggaga 227  Q
    |||| ||||    
T  4314190 agtcagaga 4314182  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 1569745 - 1569828
Alignment:
Q  190 ataataaaaaggaactgcagctgctctgcagtcggagacttaggcaatattggccgaacttcgttgccaaacatattgtgttcatt 275  Q
    |||||| ||| ||||||||| | || ||||||||||||| ||||||| |||| | |||||||||| ||| ||  ||||||||||||    
T  1569745 ataatacaaatgaactgcagttcctttgcagtcggagacgtaggcaaaattgtctgaacttcgtttccagac--attgtgttcatt 1569828  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 42172837 - 42172783
Alignment:
Q  165 cattgtaaaccttaatctttcactcataataaaaaggaactgcagctgctctgca 219  Q
    |||||||| || |||||||||||| |||||  ||||||||| |||||||||||||    
T  42172837 cattgtaagccctaatctttcactgataattcaaaggaactacagctgctctgca 42172783  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 33720155 - 33720252
Alignment:
Q  170 taaaccttaatctttcactcataataaaaaggaactgcagctgctc----tgcagtcggagacttaggcaatattggccgaacttcgttgccaaacat 263  Q
    |||||| ||| |||||||  |||||| |||||||||||||||||||    ||||||||||||  ||||||| |||||||||||||||||  |||||||    
T  33720155 taaaccctaaactttcacagataatagaaaggaactgcagctgctcgctctgcagtcggagatgtaggcaaaattggccgaacttcgttatcaaacat 33720252  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 6683775 - 6683704
Alignment:
Q  165 cattgtaaaccttaatctttcactcataataaaaaggaactgcagctgctctgcagtcggagacttaggcaa 236  Q
    ||||||||||| |||||||| |   |||||| ||||||||||||||||||||||||||| |||  |||||||    
T  6683775 cattgtaaaccctaatctttaatcgataatacaaaggaactgcagctgctctgcagtcgaagatataggcaa 6683704  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 263
Target Start/End: Complemental strand, 5354275 - 5354188
Alignment:
Q  176 ttaatctttcactcataataaaaaggaactgcagctgctctgcagtcggagacttaggcaatattggccgaacttcgttgccaaacat 263  Q
    ||||| ||||||  |||||| ||||||||| |||||||| || |||| ||||  ||||||| ||||||||||||||||| ||||||||    
T  5354275 ttaatttttcaccgataatacaaaggaactacagctgctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacat 5354188  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 16519714 - 16519775
Alignment:
Q  190 ataataaaaaggaactgcagctgctctgcagtcggagacttaggcaatattggccgaacttc 251  Q
    ||||||||||||||||||| ||||||||| || ||||| |||||||  ||| ||||||||||    
T  16519714 ataataaaaaggaactgcaactgctctgctgttggagaattaggcacaattagccgaacttc 16519775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 34564829 - 34564902
Alignment:
Q  190 ataataaaaaggaactgcagctgctctgcagtcggagacttaggcaatattggccgaacttcgttgccaaacat 263  Q
    |||||| |||||| || || | ||||| ||||||||||| |||||||  |||||||||||||||| ||||||||    
T  34564829 ataatagaaaggacctacaccagctctacagtcggagacgtaggcaaatttggccgaacttcgttaccaaacat 34564902  T

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