View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2362_high_4 (Length: 319)

Name: NF2362_high_4
Description: NF2362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2362_high_4
NF2362_high_4
[»] chr2 (5 HSPs)
chr2 (26-309)||(20000716-20000999)
chr2 (108-300)||(20019893-20020085)
chr2 (109-299)||(20029891-20030082)
chr2 (126-264)||(20010510-20010648)
chr2 (25-107)||(20030105-20030186)
[»] chr1 (2 HSPs)
chr1 (112-301)||(12572109-12572303)
chr1 (196-301)||(38192306-38192411)
[»] chr8 (3 HSPs)
chr8 (137-303)||(35038754-35038919)
chr8 (108-259)||(35039418-35039566)
chr8 (25-107)||(35039315-35039396)
[»] chr4 (1 HSPs)
chr4 (171-300)||(48301223-48301352)
[»] scaffold0117 (1 HSPs)
scaffold0117 (195-243)||(16493-16541)


Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 26 - 309
Target Start/End: Complemental strand, 20000999 - 20000716
Alignment:
Q  26 gcaaatattttattcaggaaactacgggattcacaagtttctcaagtttaatggaaaagaaagagtccaatccatttcgcagtcaagatgtcagtaaatc 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20000999 gcaaatattttattcaggaaactacgggattcacaagtttctcaagtttaatggaaaagaaagagtccaatccatttggcagtcaagatgtcagtaaatc 20000900  T
Q  126 atgttatggcagtcttaattaattttccttatgtgaagtcttcttatagctgatatgatctatttttctttgatttttctctctagcagcaaactccaaa 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20000899 atgttatggcagtcttaattaattttccttatgtgaagtcttcttatagctgatatgatctatttttctttgatttttctctctagcagcaaactccaaa 20000800  T
Q  226 caaacctatgctaccacattggtatacaactatgcaggtgtaaaacattttctgctctgaacccatttgtgatggttatctgtg 309  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20000799 caaacctatgctaccacattggtatacaactaggcaggtgtaaaacattttctgctctgaaccaatttgtgatggttatctgtg 20000716  T

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Target: chr2; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 108 - 300
Target Start/End: Complemental strand, 20020085 - 20019893
Alignment:
Q  108 tcaagatgtcagtaaatcatgttatggcagtcttaattaattttccttatgtgaagtcttcttatagctgatatgatctatttttctttgatttttctct 207  Q
    |||||||||||||||||||||||||| | ||||||| |||||||  ||| ||| ||||| ||| |||||||||| |||||||||  ||||||||||||||    
T  20020085 tcaagatgtcagtaaatcatgttatgaccgtcttaactaattttgtttacgtgcagtctgcttttagctgatataatctattttaatttgatttttctct 20019986  T
Q  208 ctagcagcaaactccaaacaaacctatgctaccacattggtatacaactatgcaggtgtaaaacattttctgctctgaacccatttgtgatgg 300  Q
    ||| ||||||||||||||||| |||||||||||||||||  ||||||||||||||||| ||||| |||||| |||||||||  ||||||||||    
T  20019985 ctaacagcaaactccaaacaaccctatgctaccacattgtgatacaactatgcaggtgcaaaactttttcttctctgaaccagtttgtgatgg 20019893  T

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Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 109 - 299
Target Start/End: Complemental strand, 20030082 - 20029891
Alignment:
Q  109 caagatgtcagtaaatcatgttatggcagtcttaattaattttcctt-atgtgaagtcttcttatagctgatatgatctatttttctttgatttttctct 207  Q
    ||||||||||||||||||||| |     ||||||| ||||||||||| ||||| |  || ||||||||||||||||| |||||| ||||||||||||| |    
T  20030082 caagatgtcagtaaatcatgtaaaccatgtcttaactaattttcctttatgtgcaaactgcttatagctgatatgatatattttactttgatttttcttt 20029983  T
Q  208 ctagcagcaaactccaaacaaacctatgctaccacattggtatacaactatgcaggtgtaaaacattttctgctctgaacccatttgtgatg 299  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||||    
T  20029982 ctagcagcaaactccaaacaaacctatgataccacattgggatacaactatgcaggtgtaaaacattttctgatctgaaccaatttgagatg 20029891  T

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Target: chr2; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 126 - 264
Target Start/End: Complemental strand, 20010648 - 20010510
Alignment:
Q  126 atgttatggcagtcttaattaattttccttatgtgaagtcttcttatagctgatatgatctatttttctttgatttttctctctagcagcaaactccaaa 225  Q
    |||||||| | ||||||| |||||||  ||||||| || || || ||||||||||||||||||||| |||||||||||||||||| || | |||| ||||    
T  20010648 atgttatgtctgtcttaactaattttatttatgtgcagactgctcatagctgatatgatctattttactttgatttttctctctaacaacgaacttcaaa 20010549  T
Q  226 caaacctatgctaccacattggtatacaactatgcaggt 264  Q
    |||| || |||||||||||||| | ||||||||||||||    
T  20010548 caaagctctgctaccacattgggagacaactatgcaggt 20010510  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 20030186 - 20030105
Alignment:
Q  25 agcaaatattttattcaggaaactacgggattcacaagtttctcaagtttaatggaaaagaaagagtccaatccatttcgcag 107  Q
    ||||||||||| ||||| ||| ||| || ||||||||||||||| || |||||||  |||||||| |||||||||||| ||||    
T  20030186 agcaaatattt-attcatgaagctaaggtattcacaagtttctcgagcttaatggggaagaaagaatccaatccatttggcag 20030105  T

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Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 112 - 301
Target Start/End: Original strand, 12572109 - 12572303
Alignment:
Q  112 gatgtcagtaaatcatgttatggcagtcttaattaattttccttatgtgaagt-----cttcttatagctgatatgatctatttttctttgatttttctc 206  Q
    ||||||||||||||||||||||||  ||||||||||||||| ||||||| | |     || |||||| |||||||| |||||||| ||||||||||||||    
T  12572109 gatgtcagtaaatcatgttatggctatcttaattaattttctttatgtgcaatgtgatctgcttatatctgatatgctctattttactttgatttttctc 12572208  T
Q  207 tctagcagcaaactccaaacaaacctatgctaccacattggtatacaactatgcaggtgtaaaacattttctgctctgaacccatttgtgatggt 301  Q
    |||| |||||||||||||||||||||||| |||||||||||  |||| |||||||||||||||||||||||| ||||||||| ||||||||||||    
T  12572209 tctaacagcaaactccaaacaaacctatgttaccacattggactacagctatgcaggtgtaaaacattttctactctgaaccaatttgtgatggt 12572303  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 301
Target Start/End: Complemental strand, 38192411 - 38192306
Alignment:
Q  196 tgatttttctctctagcagcaaactccaaacaaacctatgctaccacattggtatacaactatgcaggtgtaaaacattttctgctctgaacccatttgt 295  Q
    |||||||||| |||| ||| ||| |||||| || |||||||||||||||||   ||||||||||||||||||||||||||||| | || | || ||||||    
T  38192411 tgatttttctttctaacagaaaattccaaataatcctatgctaccacattgcactacaactatgcaggtgtaaaacattttcttcccttagccaatttgt 38192312  T
Q  296 gatggt 301  Q
    ||||||    
T  38192311 gatggt 38192306  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 137 - 303
Target Start/End: Complemental strand, 35038919 - 35038754
Alignment:
Q  137 gtcttaattaattttccttatgtgaagtcttcttatagctgatatgatctatttttctttgatttttctctctagcagcaaactccaaacaaacctatgc 236  Q
    ||||||| |||||||  ||| ||| ||||  |||| | |||||||||||| |||| ||||||||||||||  ||| ||||||||||||||||||||||||    
T  35038919 gtcttaactaattttgtttacgtgcagtccgcttacaactgatatgatcttttttactttgatttttctcaataggagcaaactccaaacaaacctatgc 35038820  T
Q  237 taccacattggtatacaactatgcaggtgtaaaacattttctgctctgaacccatttgtgatggtta 303  Q
    || ||| || | |||||||| ||||||||||||||||||||| |||| |||| ||||||||||||||    
T  35038819 taacacgtt-gcatacaactttgcaggtgtaaaacattttctactctaaaccaatttgtgatggtta 35038754  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 108 - 259
Target Start/End: Original strand, 35039418 - 35039566
Alignment:
Q  108 tcaagatgtcagtaaatcatgttatggcagtcttaattaattttccttatgtgaagtcttcttatagctgatatgatctattttt--ctttgatttttct 205  Q
    ||||||| |||||||||||||||||||| || ||  || ||||     |||||  |||| ||||||||| ||||||||| |||||  |||||  ||||||    
T  35039418 tcaagatatcagtaaatcatgttatggctgtgttgttttattt-----atgtgtcgtctgcttatagctcatatgatcttttttttactttgccttttct 35039512  T
Q  206 ctctagcagcaaactccaaacaaacctatgctaccacattggtatacaactatg 259  Q
    ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||    
T  35039513 ctctatcagcaaaccccaaacaaacctatgctaccacattgggatacaactatg 35039566  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 35039315 - 35039396
Alignment:
Q  25 agcaaatattttattcaggaaactacgggattcacaagtttctcaagtttaatggaaaagaaagagtccaatccatttcgcag 107  Q
    ||||||||||| ||||||||| ||||| ||| |||||| |||||||| |||||||| |||||||| |||||||||||||||||    
T  35039315 agcaaatattt-attcaggaagctacgagatgcacaagcttctcaagcttaatggagaagaaagaatccaatccatttcgcag 35039396  T

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Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 171 - 300
Target Start/End: Complemental strand, 48301352 - 48301223
Alignment:
Q  171 atagctgatatgatctatttttctttgatttttctctctagcagcaaactccaaacaaacctatgctaccacattggtatacaactatgcaggtgtaaaa 270  Q
    |||||| ||||| ||||||||  ||| |||||||| ||||||| ||||||||| |||| ||||||||||||||||||  |||| |||||||||| |||||    
T  48301352 atagctaatatgctctattttatttttatttttctttctagcaacaaactccatacaatcctatgctaccacattgggctacacctatgcaggtttaaaa 48301253  T
Q  271 cattttctgctctgaacccatttgtgatgg 300  Q
    ||||||||||| || | | |||||||||||    
T  48301252 cattttctgctttgtatcaatttgtgatgg 48301223  T

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Target: scaffold0117 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 16541 - 16493
Alignment:
Q  195 ttgatttttctctctagcagcaaactccaaacaaacctatgctaccaca 243  Q
    ||||||||||| |||| ||||||| ||||||||| ||||||||||||||    
T  16541 ttgatttttctttctaacagcaaattccaaacaatcctatgctaccaca 16493  T

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