View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2362_low_2 (Length: 551)
Name: NF2362_low_2
Description: NF2362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2362_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 193 - 470
Target Start/End: Complemental strand, 22199811 - 22199530
Alignment:
| Q |
193 |
ataatacgttagtggcacgatctaa-ccaaccgaggaggtacacaaatcttaggacgatctgtttgatattatacaaagatattacataaatcttaggat |
291 |
Q |
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| T |
22199811 |
ataatacgttagtggcacgatctaaaccaaccgagaaggtacacaaatcttaggacgatttgtttgatattatacaaagatattacataaatcttaggat |
22199712 |
T |
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| Q |
292 |
gtttaaatatgcaataaaatctaaattcaaatcaaacatatttttatatacaaatctctctttctc---acatcacggaatcaataacttaacctcagga |
388 |
Q |
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| T |
22199711 |
gtttaaatatgcaataaaatctaaattcaaatcaaacatatttttatatacaaatctctctttctctttacatcacggaatcaataacttaacctcagga |
22199612 |
T |
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| Q |
389 |
aacatctcaaataaaaatctttgataatcatgaaagtttattataagttttatttatcttctaacctttttaatatataaaa |
470 |
Q |
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| T |
22199611 |
aacatctcaaataaaaatctttgataatcatgaaagttcattataagttttatttatcttctaacctttttaatatataaaa |
22199530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 22199988 - 22199847
Alignment:
| Q |
8 |
agtgagatgaatatatgatggatggatgcccattagtcattggatcaaacagatggcctattaattcattcctgaactcttgtatttctctataattaaa |
107 |
Q |
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| T |
22199988 |
agtgtgatgaatatattatggatggatgcccattagtcattggatcaaacagatggcctattaattcattcccgaactcttgtatttctctataattaaa |
22199889 |
T |
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| Q |
108 |
tatggttcattcgtaatagaatcatatacataaaaaatacta |
149 |
Q |
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| T |
22199888 |
tttggttcattcgtaatagaatcatatacataaaaaatacta |
22199847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 408 - 510
Target Start/End: Original strand, 22071053 - 22071157
Alignment:
| Q |
408 |
tttgataatcatgaaagtttattataag-ttttatttatcttctaacctttt-taatatataaaatcttaaaagagaacaaaaacgatgaatgataaaaa |
505 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||||||||| |||||| |||||| | |||||| |||||||| |
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| T |
22071053 |
tttgataatcatgaaagtttattataggtttttatttatcttttaaccttttctaataaataaaatctaaaaagataacaaacaggatgaacgataaaaa |
22071152 |
T |
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| Q |
506 |
caaat |
510 |
Q |
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||||| |
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| T |
22071153 |
caaat |
22071157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 461 - 530
Target Start/End: Complemental strand, 22199260 - 22199188
Alignment:
| Q |
461 |
atatataaaatcttaaaa-gagaacaaaaacgatgaatgataa--aaacaaatgtttgtatatattacacatc |
530 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22199260 |
atatataaaatcttaaaaagagaacaaaaacgatgaatgataaataaacaaatgtttgtatatattacacatc |
22199188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 375 - 526
Target Start/End: Complemental strand, 22166799 - 22166645
Alignment:
| Q |
375 |
acttaacctcaggaaacatctcaaataaaaatctttgataatcatgaaagtttattataagtttt-atttatcttctaaccttttt--aatatataaaat |
471 |
Q |
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||||||||| | |||||| ||||| |||||||||||| |||||||||||| |||| | ||||| |||||| || |||||||||| |||| ||||||| |
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| T |
22166799 |
acttaaccttaaaaaacatatcaaacaaaaatctttgaagatcatgaaagttcattaaaggtttttatttatattttaacctttttttaataaataaaat |
22166700 |
T |
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| Q |
472 |
cttaaaagagaacaaaaacgatgaatgataaaaacaaatgtttgtatatattaca |
526 |
Q |
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| |||||| |||||| | ||||||||||||||||||| || |||||||||||| |
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| T |
22166699 |
cccaaaagacaacaaatataatgaatgataaaaacaaatattggtatatattaca |
22166645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 425
Target Start/End: Complemental strand, 22200036 - 22199986
Alignment:
| Q |
375 |
acttaacctcaggaaacatctcaaataaaaatctttgataatcatgaaagt |
425 |
Q |
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||||||||| ||||| |||||||||||||||||||||||| ||||||||| |
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| T |
22200036 |
acttaaccttaggaatcatctcaaataaaaatctttgataggcatgaaagt |
22199986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 22349013 - 22349053
Alignment:
| Q |
392 |
atctcaaataaaaatctttgataatcatgaaagtttattat |
432 |
Q |
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|||||| ||||||||||||||| |||||||||||| ||||| |
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| T |
22349013 |
atctcatataaaaatctttgatgatcatgaaagttcattat |
22349053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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