View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2362_low_5 (Length: 260)
Name: NF2362_low_5
Description: NF2362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2362_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 29274561 - 29274396
Alignment:
| Q |
23 |
gtgtttgttgttcatttggtcacaatatatacaagagattttaccaaaagtcatggatataattatgttctctcaatcaagagactatctcctacaatta |
122 |
Q |
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| T |
29274561 |
gtgtttgtcgttcatttggtcacaatatatacaagagattttaccaaaagtcatggatataattatgttctctcaatcaaaagactatttcctacaatta |
29274462 |
T |
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| Q |
123 |
atttcttaatatataaatgctaattaaatatagaagattatatgcatattttaattcatcctcgtagtcgaagtcc |
198 |
Q |
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| T |
29274461 |
----------atataaatgctaattaaatatagaagatgatatgcatattttaattcatcctcgtagtcgaagtcc |
29274396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 29274343 - 29274301
Alignment:
| Q |
202 |
tttaccatcttcacttccaaaaattcttgtcctaggtagagag |
244 |
Q |
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| T |
29274343 |
tttaccatcttcacttccaaaaattcttgtactaggtagagag |
29274301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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