View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2362_low_7 (Length: 237)
Name: NF2362_low_7
Description: NF2362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2362_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 36521190 - 36521044
Alignment:
| Q |
1 |
tttggctacaagggagcaatgtctgcccattcatgacatatcttgtggtttttgctaaactgatattcagtttagtaactatatcttcttatctagtcca |
100 |
Q |
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| T |
36521190 |
tttggctacaagggagcaatgtctgcccattcatgacatatcttgtgttttttgctaaactgatattcagtttagtaactatatcttcttatctagtcta |
36521091 |
T |
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| Q |
101 |
gggccgacctaagggccaaacccaagcaagtgctttaagcctcaaaattttggatg |
156 |
Q |
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| T |
36521090 |
gggccaagc---------aacccaagcaagtgctttaagcctcaaaattttggatg |
36521044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 36520608 - 36520551
Alignment:
| Q |
166 |
aaggtgtaaaccataacgaaggtgtttgacatctcgttatgcatggaacttggtcctg |
223 |
Q |
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| T |
36520608 |
aaggtgtaaaccataacgaaggtgtttgacatctcgttatgcatggaacttggtcctg |
36520551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 6606255 - 6606310
Alignment:
| Q |
99 |
cagggccgacctaagggccaa---acccaagcaagtgctttaagcctcaaaatttt |
151 |
Q |
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| T |
6606255 |
cagggccggcctaagggccaagccacccaagcaagggctttaggcctcaaaatttt |
6606310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 13511216 - 13511161
Alignment:
| Q |
99 |
cagggccgacctaagggccaa---acccaagcaagtgctttaagcctcaaaatttt |
151 |
Q |
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| T |
13511216 |
cagggccgacctaagggtcaagccacccaagcaagggctttaggcctcaaaatttt |
13511161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 28430237 - 28430174
Alignment:
| Q |
99 |
cagggccgacctaagggccaa---acccaagcaagtgctttaagcctcaaaattttggatgaaa |
159 |
Q |
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| T |
28430237 |
cagggccgacctaagggccaagcaacccaagcaagggctttaggcctcaaaattttggatgaaa |
28430174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 27572450 - 27572510
Alignment:
| Q |
102 |
ggccgacctaagggccaa---acccaagcaagtgctttaagcctcaaaattttggatgaaa |
159 |
Q |
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| T |
27572450 |
ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttggatgaaa |
27572510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 49535883 - 49535851
Alignment:
| Q |
120 |
acccaagcaagtgctttaagcctcaaaattttg |
152 |
Q |
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| T |
49535883 |
acccaagcaagggctttaagcctcaaaattttg |
49535851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 8221886 - 8221831
Alignment:
| Q |
99 |
cagggccgacctaagggccaa---acccaagcaagtgctttaagcctcaaaatttt |
151 |
Q |
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| T |
8221886 |
cagggccggcctaagggccaagcaacccaagcaagtgctttaggcctcaaaatttt |
8221831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 7739012 - 7738950
Alignment:
| Q |
100 |
agggccgacctaagggccaaac---ccaagcaagtgctttaagcctcaaaattttggatgaaa |
159 |
Q |
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| T |
7739012 |
agggccgacctaagggccaagcaatcaaagcaagggctttaagcctcaaaattttgggtgaaa |
7738950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 2603973 - 2603933
Alignment:
| Q |
119 |
aacccaagcaagtgctttaagcctcaaaattttggatgaaa |
159 |
Q |
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| T |
2603973 |
aacccaagcaagggctttaagcctcaaaattttgggtgaaa |
2603933 |
T |
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