View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2363_high_1 (Length: 487)
Name: NF2363_high_1
Description: NF2363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2363_high_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 47234914 - 47235406
Alignment:
| Q |
1 |
ccagaaaccagatctaggttaggatccggaaatcaaagaagcctagctaggatagatctagtttatttacaaaaagttattagtattaataatatgtgtg |
100 |
Q |
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| T |
47234914 |
ccagaaaccctagctaggttaggatccagaaatcaaagaagcctagctaggatagatctattttatttacaaaaagttattagtattaat---atgtgtg |
47235010 |
T |
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| Q |
101 |
tttaatgagatcatgtatatataactgtaattcacctgaacatcttgccatgacagtgactgaaacgcggcggccatgtttacagaccatagatttgtgc |
200 |
Q |
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| T |
47235011 |
tttaattagttcatgtatatataactgtaattcacctgaacatcttgccatgacagtgactgaaacgcggcggccatgtttactgaccatagatttgtgc |
47235110 |
T |
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| Q |
201 |
agtgaccacatcgaacggtcactatgtcaaacaagctactgcatggaacactcacctgcatcaagtcaaatcaacctttgattaattactaactagcttc |
300 |
Q |
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| T |
47235111 |
agtgaccacatcgaacggtcactatgtcaaacaagctactgcatggaacactcacctgcatcaagtcaaatcaacctttgattaattactaactagcttc |
47235210 |
T |
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| Q |
301 |
attaattatttcccaatatttcaaattcaattacatacatgcatactctaggcacacac---------acnnnnnnnnntcaagggtttctcacttaaaa |
391 |
Q |
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| T |
47235211 |
attaattatttcccaatatttcaaattcaattacatacatgcatactctagacacacacaaaaaataaaataaaaaaaatcaagggtttctcacttaaaa |
47235310 |
T |
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| Q |
392 |
caagtacacaaatatttgaaacccacagaaaacatcacatttcacacttgttatgagacctgatcttgaaaaatgaaaaataataataagaattta |
487 |
Q |
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| T |
47235311 |
caagtacacaaatatttgaaacccataaaaaacatcacatttcacacttgttatgggacctgatcttgaaaaatgaaaaatgataataagaattta |
47235406 |
T |
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