View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2363_high_11 (Length: 320)

Name: NF2363_high_11
Description: NF2363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2363_high_11
NF2363_high_11
[»] chr3 (2 HSPs)
chr3 (120-287)||(40282344-40282513)
chr3 (15-101)||(10773015-10773101)
[»] chr4 (2 HSPs)
chr4 (15-101)||(26893109-26893195)
chr4 (15-101)||(42396923-42397009)
[»] chr8 (1 HSPs)
chr8 (15-101)||(39919525-39919611)
[»] chr7 (3 HSPs)
chr7 (15-101)||(38889690-38889776)
chr7 (15-69)||(13428175-13428229)
chr7 (17-94)||(45140348-45140425)
[»] chr6 (2 HSPs)
chr6 (15-101)||(18489499-18489585)
chr6 (15-101)||(16477840-16477926)
[»] chr5 (1 HSPs)
chr5 (15-101)||(21824984-21825070)
[»] chr2 (1 HSPs)
chr2 (19-101)||(26438112-26438194)
[»] chr1 (1 HSPs)
chr1 (15-101)||(7637851-7637937)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 120 - 287
Target Start/End: Original strand, 40282344 - 40282513
Alignment:
Q  120 aattcggtcatttaatataactttcggttaaaaaa-ctatatacattactataactgtcaatttatgcaagttcata-gatttagtctcaactcacacgt 217  Q
    |||||||||| |||||||| ||||||| ||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||| ||||||||||     
T  40282344 aattcggtcaattaatatagctttcggataaaaaaactatatacattaatataactgtcaatttatgcaagtccataagatttagtctaaactcacacga 40282443  T
Q  218 ttggggccatacatccaaaaagtccaagaaaattgctctttaaacttataaaattgttctcccaaaattg 287  Q
    |||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  40282444 ttggggccatccatccaaaaagtcctaaaaaattgctctttaaacttataaaattgttctcccaaaattg 40282513  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 10773101 - 10773015
Alignment:
Q  15 ggacgaaaggcaaagaaaggaaaaaagcttcactctttcaacaatgctaagaggatcgctggccaaattgttgaagacacaattatt 101  Q
    ||||||||| |||| ||| || || ||||||||||||||||||||| |||||| || |||  ||||||| ||||||||||| |||||    
T  10773101 ggacgaaagccaaaaaaaagacaacagcttcactctttcaacaatgttaagagaattgctaaccaaattattgaagacacagttatt 10773015  T

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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 26893195 - 26893109
Alignment:
Q  15 ggacgaaaggcaaagaaaggaaaaaagcttcactctttcaacaatgctaagaggatcgctggccaaattgttgaagacacaattatt 101  Q
    ||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  26893195 ggacgaaagccaaagaaaggataaaagcttcactctttcaacaacgctaagaggatcgctcgccaaattgttgaagacacaattatt 26893109  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 42396923 - 42397009
Alignment:
Q  15 ggacgaaaggcaaagaaaggaaaaaagcttcactctttcaacaatgctaagaggatcgctggccaaattgttgaagacacaattatt 101  Q
    ||||||||| ||||| || ||||| ||||||||||||||||||| |||||||||||||||  ||||||| ||||||||||| |||||    
T  42396923 ggacgaaagccaaaggaaagaaaagagcttcactctttcaacaaagctaagaggatcgctaaccaaatttttgaagacacagttatt 42397009  T

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Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 39919525 - 39919611
Alignment:
Q  15 ggacgaaaggcaaagaaaggaaaaaagcttcactctttcaacaatgctaagaggatcgctggccaaattgttgaagacacaattatt 101  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||    
T  39919525 ggacgaaagccaaagaaaggagaaaagcttcactctttcaacaatgctaagaggatcgcttgccaaattattgaaaacacaattatt 39919611  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 38889776 - 38889690
Alignment:
Q  15 ggacgaaaggcaaagaaaggaaaaaagcttcactctttcaacaatgctaagaggatcgctggccaaattgttgaagacacaattatt 101  Q
    ||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||  ||||| | |||||||||||||||||    
T  38889776 ggacgaaagccaaaggaaagaaaagagcttcactctttcaacaatgctaagaggatcgctaaccaaaattttgaagacacaattatt 38889690  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 13428175 - 13428229
Alignment:
Q  15 ggacgaaaggcaaagaaaggaaaaaagcttcactctttcaacaatgctaagagga 69  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  13428175 ggacgaaagccaaagaaaggaaaagagcttcactctttcaacaatgctaagagga 13428229  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 45140348 - 45140425
Alignment:
Q  17 acgaaaggcaaagaaaggaaaaaagcttcactctttcaacaatgctaagaggatcgctggccaaattgttgaagacac 94  Q
    ||||||| |||||||| || || ||||||||||||||||||||| ||||||||| |||  ||||||| ||||||||||    
T  45140348 acgaaagccaaagaaaagacaacagcttcactctttcaacaatgttaagaggattgctaaccaaattattgaagacac 45140425  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 18489585 - 18489499
Alignment:
Q  15 ggacgaaaggcaaagaaaggaaaaaagcttcactctttcaacaatgctaagaggatcgctggccaaattgttgaagacacaattatt 101  Q
    ||||||||| ||||| ||  |||| ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  18489585 ggacgaaagccaaaggaaaaaaaacagcttcactctttcaacaatggtaagaggatcgctaaccaaattgttgaagacacaattatt 18489499  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 16477840 - 16477926
Alignment:
Q  15 ggacgaaaggcaaagaaaggaaaaaagcttcactctttcaacaatgctaagaggatcgctggccaaattgttgaagacacaattatt 101  Q
    ||||||||| |||||||| || || ||||||||||||||||||| ||||||||||| |||  ||||||||||||||||||| |||||    
T  16477840 ggacgaaagccaaagaaaagacaacagcttcactctttcaacaacgctaagaggattgctaaccaaattgttgaagacacatttatt 16477926  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 21825070 - 21824984
Alignment:
Q  15 ggacgaaaggcaaagaaaggaaaaaagcttcactctttcaacaatgctaagaggatcgctggccaaattgttgaagacacaattatt 101  Q
    ||||||||| |||||||| || || ||||||||||||||||||| ||||||||||| |||  ||||||||||||||||||| |||||    
T  21825070 ggacgaaagccaaagaaaagacaacagcttcactctttcaacaacgctaagaggattgctaaccaaattgttgaagacacatttatt 21824984  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 26438194 - 26438112
Alignment:
Q  19 gaaaggcaaagaaaggaaaaaagcttcactctttcaacaatgctaagaggatcgctggccaaattgttgaagacacaattatt 101  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |||  ||||||| ||||||||||| |||||    
T  26438194 gaaagtcaaaggaaggaaaagagcttcactctttcaacaatgctaagaggattgctaaccaaatttttgaagacacagttatt 26438112  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 7637851 - 7637937
Alignment:
Q  15 ggacgaaaggcaaagaaaggaaaaaagcttcactctttcaacaatgctaagaggatcgctggccaaattgttgaagacacaattatt 101  Q
    ||||||||| |||||||| || || ||||||||| ||| ||||||| ||||||||| |||  ||||||| ||||||||||| |||||    
T  7637851 ggacgaaagccaaagaaaagacaacagcttcactttttgaacaatgttaagaggattgctaaccaaattattgaagacacagttatt 7637937  T

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