View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2363_high_16 (Length: 262)
Name: NF2363_high_16
Description: NF2363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2363_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 37516738 - 37516491
Alignment:
| Q |
7 |
ctatcagtttgaaacttagttgcatgctgcgttcattcttcaagctctcttgtttgttacccaagtctagcagtctagattattttcataatctgctgtt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37516738 |
ctatcagtttgaaacttagttgcatgctgcgttcattcttcaagctctcttgtttgttacccaagtctagcagtctagattattttcataatctgctgtt |
37516639 |
T |
|
| Q |
107 |
agtacaatagttttactctcatttgctcagatgtaaattgtaatagccatgctaagctagacgatatactttttctattaaatttctctcgttataatga |
206 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
37516638 |
agtacaataattttactctcatttgctcagatgtaaattgtaatagccatgctaagctagacgatatacttgttctattaaatttctcttgttataatga |
37516539 |
T |
|
| Q |
207 |
--------attcatgggtaagtatctacccattcagggagatcaaaac |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37516538 |
acatcgtgattcatgggtaagtatctacccattcagggagatcaaaac |
37516491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 14842926 - 14842677
Alignment:
| Q |
7 |
ctatcagtttgaaacttagttgcatgctgcgttcattcttcaagctctcttgtttgttacccaagtctagcagtctagattattttcataatctgctgtt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14842926 |
ctatcagtttgaaacttagttgcatgctgcgttcattcttcaagctctcttgtttgttacccaagtttagcagtctagattattttcataatctgctgtt |
14842827 |
T |
|
| Q |
107 |
agtacaatagttttactctcatttgctcagatgtaaattgtaatagccatgctaagctagacgatatactttttctattaaatttctctcgttataatga |
206 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
14842826 |
agtacaataattttactctcatttgctcagatgtaaattgtaatagccatgctaagctagacgatatacttgttctattaaatttctcttgttataatga |
14842727 |
T |
|
| Q |
207 |
--------attcatgggtaagtatctacccattcagggagatcaaaactg |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14842726 |
acatcgtgattcatgggtaagtatctacccattcagggagatcaaaactg |
14842677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University