View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2363_high_3 (Length: 443)

Name: NF2363_high_3
Description: NF2363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2363_high_3
NF2363_high_3
[»] chr1 (1 HSPs)
chr1 (30-433)||(18921948-18922358)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 30 - 433
Target Start/End: Complemental strand, 18922358 - 18921948
Alignment:
Q  30 gaccagctccaaaccagaaaaaacagaaaaacaacgctg--cc----ccagttcagcctcgttcaaa-ccagctctgttatcagtctgctagaagcatta 122  Q
    |||| ||||||||||||||||||||||||| |||| ||   ||    |||||||||||||||||||| |||||||| ||| |||||||||||||||||||    
T  18922358 gaccggctccaaaccagaaaaaacagaaaagcaacactatacctataccagttcagcctcgttcaaaaccagctcttttaccagtctgctagaagcatta 18922259  T
Q  123 ccccgtgagtccaaggtacacccatggatttgagaaccattgaactgtatagtaattgcagctgtttgctctcacatgtaaccaattccacaaacacatt 222  Q
    ||||  |||||| |||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||||||||||||||| |||  ||    
T  18922258 ccccacgagtcctaggtacgcccatggatttgagaaccattgaactatatagtaattgaagctgtttgctctcgcgtgtaaccaattccacagaca--tt 18922161  T
Q  223 tttgactgttataaaatagcttcaaccgaaatagatttacctcggaatatccttagatatcttacttttcaaatagatcaaatggtcgcaaactcagtga 322  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||||| |||||| |||||||||||||||    
T  18922160 tttgactgttctaaaatagcttcaaccgaaatagatttaccttggaatatccgtaggtatcttactttttaaatagaccaaatgctcgcaaactcagtga 18922061  T
Q  323 aacttgacactatc--aagaatcagagactaaccttcattgattttgagccttagtcatcttgcacaataattccactttcagttttcagtaaattgttt 420  Q
    ||||||||||| ||   |||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||    
T  18922060 aacttgacactgtcgagagaatcagagactaaccttcattggttttgagccttagtgatctggcacaataattccactttcagttttcagttatttgttt 18921961  T
Q  421 tattttgcctttg 433  Q
    |||||| ||||||    
T  18921960 tatttttcctttg 18921948  T

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