View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2363_low_1 (Length: 630)
Name: NF2363_low_1
Description: NF2363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2363_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 50463777 - 50464227
Alignment:
| Q |
1 |
tggatgggcacaagagggtaagaattgccatggatgttgttttctttgtgaaatttctttggttttgaaaagagaaggtagtttcaaatttttctttccc |
100 |
Q |
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| T |
50463777 |
tggatggccacaagagggtaagaattgccatggatgttgttttctttgtgaaatttctttggttttgaaaagagaaggtagtttcaaatttttctttccc |
50463876 |
T |
|
| Q |
101 |
atattgtttgtgaagagagggtgggttctatgagttg---ttgtgttaggagagttttcgtgtttgtaataaatttgatgagaaatgagttatttaaagc |
197 |
Q |
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| T |
50463877 |
atattgtttgtgaagagagggtgggttctatgagttgttgttgtgttaggagagtattcgtgtttgtaataaatttgatgagaaatgagttatttaaagc |
50463976 |
T |
|
| Q |
198 |
acaggattgtgatatgaagcaaaagaatatgacaaggaaatggggtctggtaggtgctttcatgtgtgaatttaatttgtaggttagtaaaattcaatgt |
297 |
Q |
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| T |
50463977 |
acaggattgtgatatgaagcaaaagaatatgacaaggaaatggggtctggtaggtgctttcatgtgtgaatttaatttgtaggttagtaaaattcaatgt |
50464076 |
T |
|
| Q |
298 |
tattcaatgcacgcatcaacaactgaatgtaacagcactcttttcagaagtgtcagtctcatatcttcctnnnnnnnntgttagatatttttaatttatt |
397 |
Q |
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| T |
50464077 |
tattcaatgcacgcatcaacaactgaatgtaacagcactcttttcagaagtgtcagtctcatatcttcctaaaaaaaatgttagatatttttaatttatt |
50464176 |
T |
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| Q |
398 |
tttataaaatatataattaccatcaaggtaagagatttaagaaatctcaaa |
448 |
Q |
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| T |
50464177 |
tttaaaaaatatataattaccatcaaggtaagagatttaagtaatctcaaa |
50464227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 444 - 623
Target Start/End: Original strand, 50464299 - 50464476
Alignment:
| Q |
444 |
tcaaatatatttaacaacggagattgaacaacgataaatgatgttgaatatttcatatgtataacatgattgtnnnnnnnnntatcgagtatctttttta |
543 |
Q |
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||||||||||||||| ||| |||||||| ||||||||||| |||| |||||||||||||||||| |||||||| ||||||||||||||| || |
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| T |
50464299 |
tcaaatatatttaacgacgaagattgaataacgataaatggtgttaaatatttcatatgtataatatgattgtaaaaaaaa-tatcgagtatctttt-ta |
50464396 |
T |
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| Q |
544 |
taaaaagaaaaaggtatgccaatttggctccgaatctcagggtttatatagtgttgacgtagatacttacatattcttcg |
623 |
Q |
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| T |
50464397 |
taaaaagaaaaaggtatgtcaatttggctccgaacctcagggttcatatagtgttgacgtagatacttacatattattcg |
50464476 |
T |
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